Result of FASTA (ccds) for
pF1KB8105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8105, 117 aa
1>>>pF1KB8105 117 - 117 aa - 117 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0297+/-0.000597; mu= 11.2713+/- 0.036
mean_var=53.5514+/-10.834, 0's: 0 Z-trim(110.3): 13 B-trim: 615 in 1/52
Lambda= 0.175262
statistics sampled from 11471 (11482) to 11471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.353), width: 16
Scan time: 1.110
The best scores are: opt bits E(32554)
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 793 207.7 1.4e-54
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 698 183.7 2.3e-47
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 479 128.3 1.1e-30
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 309 85.3 1.1e-17
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 270 75.4 9e-15
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 257 72.2 9e-14
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 255 71.7 1.3e-13
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 244 68.9 8.8e-13
>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa)
initn: 793 init1: 793 opt: 793 Z-score: 1093.6 bits: 207.7 E(32554): 1.4e-54
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
70 80 90 100 110
>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa)
initn: 698 init1: 698 opt: 698 Z-score: 963.8 bits: 183.7 E(32554): 2.3e-47
Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
::::::::::: ::::::::::.::::::::::::...::::.:::.:::::::::
CCDS11 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
70 80 90 100 110
>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa)
initn: 514 init1: 479 opt: 479 Z-score: 664.6 bits: 128.3 E(32554): 1.1e-30
Smith-Waterman score: 479; 61.2% identity (86.2% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
::...:::: .:.: :. ::: ::::::::::::. ... :.::::::::::.::.::
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
...:::::.: : :.:.::..:.: .: ::::::: ...:: ::::::: :...:
CCDS10 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
70 80 90 100 110
>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa)
initn: 308 init1: 142 opt: 309 Z-score: 430.7 bits: 85.3 E(32554): 1.1e-17
Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (5-116:13-126)
10 20 30 40 50
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV
.:. . . :..: :: :.:...::.::. :. .: ::: :.::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS
:..::. :: .::.:. :: .:....::: .. ::::...:.: ..:: :.:..:.
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
pF1KB8 DESVYGK
.. ..:
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa)
initn: 260 init1: 123 opt: 270 Z-score: 378.7 bits: 75.4 E(32554): 9e-15
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:7-120)
10 20 30 40 50
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
.:. . : : :: ..:: ..:...:::.:. . ..: ::: :.:::. ...
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
... .::.:..: : .:.:..:: ... .:. ....::....:: :::..:... ..:
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KB8 K
CCDS13 F
>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa)
initn: 247 init1: 123 opt: 257 Z-score: 360.7 bits: 72.2 E(32554): 9e-14
Smith-Waterman score: 257; 35.2% identity (81.0% similar) in 105 aa overlap (14-116:20-124)
10 20 30 40 50
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS
: :: ..:: ..:...:::.:. . ..: ::: :.:::.
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 DLTVGQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDE
...... .::.:..: : .:.:..:: ... .:. ....::....:: :::..:...
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
70 80 90 100 110 120
pF1KB8 SVYGK
..:
CCDS13 ETFGF
>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa)
initn: 244 init1: 113 opt: 255 Z-score: 358.0 bits: 71.7 E(32554): 1.3e-13
Smith-Waterman score: 255; 32.5% identity (78.9% similar) in 114 aa overlap (5-116:7-120)
10 20 30 40 50
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
.:. . :: : .. . ::...: ..:::.:. . ..: ::: :.:::. ...
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
... .::.:..: ..:.:..:: ... .:. ....::....:: :::..:... ..:
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
70 80 90 100 110 120
pF1KB8 K
CCDS10 MKLSV
>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa)
initn: 233 init1: 113 opt: 244 Z-score: 343.0 bits: 68.9 E(32554): 8.8e-13
Smith-Waterman score: 244; 31.6% identity (78.1% similar) in 114 aa overlap (5-116:7-120)
10 20 30 40 50
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
.:. . :: : .. . ::...: ..:::.:. . ..: ::: :.:::. ...
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
... .::.:..: ..:.:..:: ... .:. ....::....:: :::.. ... ..:
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
70 80 90 100 110 120
pF1KB8 K
CCDS41 MKLSV
117 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:31:08 2016 done: Fri Nov 4 09:31:09 2016
Total Scan time: 1.110 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]