FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8103, 78 aa
  1>>>pF1KB8103 78 - 78 aa - 78 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3523+/-0.000238; mu= 12.3375+/- 0.015
 mean_var=47.8138+/- 9.418, 0's: 0 Z-trim(121.5): 2  B-trim: 100 in 1/53
 Lambda= 0.185480
 statistics sampled from 38321 (38323) to 38321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.449), width:  16
 Scan time:  3.750

The best scores are:                                      opt bits E(85289)
NP_061054 (OMIM: 614986) calcium/calmodulin-depend (  78)  539 150.4 2.7e-37
NP_150284 (OMIM: 608721) calcium/calmodulin-depend (  79)  352 100.4 3.2e-22


>>NP_061054 (OMIM: 614986) calcium/calmodulin-dependent   (78 aa)
 initn: 539 init1: 539 opt: 539  Z-score: 790.5  bits: 150.4 E(85289): 2.7e-37
Smith-Waterman score: 539; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KB8 MSEVLPYGDEKLSPYGDGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVVIED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MSEVLPYGDEKLSPYGDGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVVIED
               10        20        30        40        50        60

               70        
pF1KB8 DRIDDVLKNMTDKAPPGV
       ::::::::::::::::::
NP_061 DRIDDVLKNMTDKAPPGV
               70        

>>NP_150284 (OMIM: 608721) calcium/calmodulin-dependent   (79 aa)
 initn: 296 init1: 296 opt: 352  Z-score: 519.9  bits: 100.4 E(85289): 3.2e-22
Smith-Waterman score: 352; 65.4% identity (87.7% similar) in 81 aa overlap (1-78:1-79)

               10           20        30        40        50       
pF1KB8 MSEVLPYGDEKLSPYG---DGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVV
       :::.:::...:.. .:   .:.:..  :::::::::.::...: :::::::::::.::::
NP_150 MSEILPYSEDKMGRFGADPEGSDLS--FSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVV
               10        20          30        40        50        

        60        70        
pF1KB8 IEDDRIDDVLKNMTDKAPPGV
       :::::::::::.: .: : ::
NP_150 IEDDRIDDVLKGMGEKPPSGV
       60        70         




78 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:29:33 2016 done: Fri Nov  4 09:29:33 2016
 Total Scan time:  3.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]