FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8103, 78 aa
  1>>>pF1KB8103 78 - 78 aa - 78 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6481+/-0.000451; mu= 10.6218+/- 0.027
 mean_var=46.8861+/- 9.183, 0's: 0 Z-trim(114.7): 4  B-trim: 4 in 1/52
 Lambda= 0.187306
 statistics sampled from 15222 (15224) to 15222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.468), width:  16
 Scan time:  1.280

The best scores are:                                      opt bits E(32554)
CCDS207.1 CAMK2N1 gene_id:55450|Hs108|chr1         (  78)  539 151.8   4e-38
CCDS3257.1 CAMK2N2 gene_id:94032|Hs108|chr3        (  79)  352 101.3 6.5e-23


>>CCDS207.1 CAMK2N1 gene_id:55450|Hs108|chr1              (78 aa)
 initn: 539 init1: 539 opt: 539  Z-score: 798.0  bits: 151.8 E(32554): 4e-38
Smith-Waterman score: 539; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KB8 MSEVLPYGDEKLSPYGDGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVVIED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MSEVLPYGDEKLSPYGDGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVVIED
               10        20        30        40        50        60

               70        
pF1KB8 DRIDDVLKNMTDKAPPGV
       ::::::::::::::::::
CCDS20 DRIDDVLKNMTDKAPPGV
               70        

>>CCDS3257.1 CAMK2N2 gene_id:94032|Hs108|chr3             (79 aa)
 initn: 296 init1: 296 opt: 352  Z-score: 524.8  bits: 101.3 E(32554): 6.5e-23
Smith-Waterman score: 352; 65.4% identity (87.7% similar) in 81 aa overlap (1-78:1-79)

               10           20        30        40        50       
pF1KB8 MSEVLPYGDEKLSPYG---DGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVV
       :::.:::...:.. .:   .:.:..  :::::::::.::...: :::::::::::.::::
CCDS32 MSEILPYSEDKMGRFGADPEGSDLS--FSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVV
               10        20          30        40        50        

        60        70        
pF1KB8 IEDDRIDDVLKNMTDKAPPGV
       :::::::::::.: .: : ::
CCDS32 IEDDRIDDVLKGMGEKPPSGV
       60        70         




78 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:29:32 2016 done: Fri Nov  4 09:29:32 2016
 Total Scan time:  1.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]