FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8009, 383 aa
  1>>>pF1KB8009 383 - 383 aa - 383 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6472+/-0.000338; mu= 11.6359+/- 0.021
 mean_var=125.9953+/-24.985, 0's: 0 Z-trim(118.5): 120  B-trim: 0 in 0/54
 Lambda= 0.114261
 statistics sampled from 31393 (31547) to 31393 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.37), width:  16
 Scan time:  5.530

The best scores are:                                      opt bits E(85289)
NP_068590 (OMIM: 607203) protein salvador homolog  ( 383) 2652 448.2 1.5e-125
XP_016877057 (OMIM: 607203) PREDICTED: protein sal ( 350) 2449 414.7 1.7e-115
XP_011535359 (OMIM: 607203) PREDICTED: protein sal ( 350) 2449 414.7 1.7e-115


>>NP_068590 (OMIM: 607203) protein salvador homolog 1 [H  (383 aa)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 2374.8  bits: 448.2 E(85289): 1.5e-125
Smith-Waterman score: 2652; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KB8 MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 STSGDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 STSGDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GRVAATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 GRVAATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ERVESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 ERVESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TAEIPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TAEIPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQA
              310       320       330       340       350       360

              370       380   
pF1KB8 LLTELENRKQRQQWYAQQHGKNF
       :::::::::::::::::::::::
NP_068 LLTELENRKQRQQWYAQQHGKNF
              370       380   

>>XP_016877057 (OMIM: 607203) PREDICTED: protein salvado  (350 aa)
 initn: 2449 init1: 2449 opt: 2449  Z-score: 2194.5  bits: 414.7 E(85289): 1.7e-115
Smith-Waterman score: 2449; 100.0% identity (100.0% similar) in 350 aa overlap (34-383:1-350)

            10        20        30        40        50        60   
pF1KB8 RKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAFSTS
                                     ::::::::::::::::::::::::::::::
XP_016                               MPSFIRHGPTIPRRTDICLPDSSPNAFSTS
                                             10        20        30

            70        80        90       100       110       120   
pF1KB8 GDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFA
               40        50        60        70        80        90

           130       140       150       160       170       180   
pF1KB8 VENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGIGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGIGRV
              100       110       120       130       140       150

           190       200       210       220       230       240   
pF1KB8 AATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERV
              160       170       180       190       200       210

           250       260       270       280       290       300   
pF1KB8 ESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYHTAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYHTAE
              220       230       240       250       260       270

           310       320       330       340       350       360   
pF1KB8 IPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQALLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQALLT
              280       290       300       310       320       330

           370       380   
pF1KB8 ELENRKQRQQWYAQQHGKNF
       ::::::::::::::::::::
XP_016 ELENRKQRQQWYAQQHGKNF
              340       350

>>XP_011535359 (OMIM: 607203) PREDICTED: protein salvado  (350 aa)
 initn: 2449 init1: 2449 opt: 2449  Z-score: 2194.5  bits: 414.7 E(85289): 1.7e-115
Smith-Waterman score: 2449; 100.0% identity (100.0% similar) in 350 aa overlap (34-383:1-350)

            10        20        30        40        50        60   
pF1KB8 RKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAFSTS
                                     ::::::::::::::::::::::::::::::
XP_011                               MPSFIRHGPTIPRRTDICLPDSSPNAFSTS
                                             10        20        30

            70        80        90       100       110       120   
pF1KB8 GDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFA
               40        50        60        70        80        90

           130       140       150       160       170       180   
pF1KB8 VENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGIGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGIGRV
              100       110       120       130       140       150

           190       200       210       220       230       240   
pF1KB8 AATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGWERV
              160       170       180       190       200       210

           250       260       270       280       290       300   
pF1KB8 ESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYHTAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYHTAE
              220       230       240       250       260       270

           310       320       330       340       350       360   
pF1KB8 IPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQALLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQALLT
              280       290       300       310       320       330

           370       380   
pF1KB8 ELENRKQRQQWYAQQHGKNF
       ::::::::::::::::::::
XP_011 ELENRKQRQQWYAQQHGKNF
              340       350




383 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:14:46 2016 done: Wed Nov  2 23:14:47 2016
 Total Scan time:  5.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]