FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8009, 383 aa
  1>>>pF1KB8009 383 - 383 aa - 383 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6447+/-0.00079; mu= 11.3735+/- 0.048
 mean_var=105.4090+/-21.270, 0's: 0 Z-trim(110.9): 54  B-trim: 0 in 0/51
 Lambda= 0.124921
 statistics sampled from 11914 (11963) to 11914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS9701.1 SAV1 gene_id:60485|Hs108|chr14          ( 383) 2652 488.2 5.1e-138


>>CCDS9701.1 SAV1 gene_id:60485|Hs108|chr14               (383 aa)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 2591.3  bits: 488.2 E(32554): 5.1e-138
Smith-Waterman score: 2652; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KB8 MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 STSGDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 STSGDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GRVAATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 GRVAATSLGNLTNHGSEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLEREGLPPGW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ERVESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 ERVESSEFGTYYVDHTNKKAQYRHPCAPSVPRYDQPPPVTYQPQQTERNQSLLVPANPYH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TAEIPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TAEIPDWLQVYARAPVKYDHILKWELFQLADLDTYQGMLKLLFMKELEQIVKMYEAYRQA
              310       320       330       340       350       360

              370       380   
pF1KB8 LLTELENRKQRQQWYAQQHGKNF
       :::::::::::::::::::::::
CCDS97 LLTELENRKQRQQWYAQQHGKNF
              370       380   




383 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:14:45 2016 done: Wed Nov  2 23:14:46 2016
 Total Scan time:  2.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]