FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7988, 325 aa
  1>>>pF1KB7988 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7134+/-0.000779; mu= 7.8623+/- 0.048
 mean_var=197.3344+/-40.253, 0's: 0 Z-trim(115.7): 192  B-trim: 0 in 0/53
 Lambda= 0.091300
 statistics sampled from 16115 (16317) to 16115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.501), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS4039.1 OTP gene_id:23440|Hs108|chr5            ( 325) 2206 302.2 3.7e-82
CCDS14215.1 ARX gene_id:170302|Hs108|chrX          ( 562)  416 66.6 5.2e-11


>>CCDS4039.1 OTP gene_id:23440|Hs108|chr5                 (325 aa)
 initn: 2206 init1: 2206 opt: 2206  Z-score: 1588.4  bits: 302.2 E(32554): 3.7e-82
Smith-Waterman score: 2206; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB7 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 EDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSS
              250       260       270       280       290       300

              310       320     
pF1KB7 DVWRGTSIASLRRKALEHTVSMSFT
       :::::::::::::::::::::::::
CCDS40 DVWRGTSIASLRRKALEHTVSMSFT
              310       320     

>>CCDS14215.1 ARX gene_id:170302|Hs108|chrX               (562 aa)
 initn: 434 init1: 399 opt: 416  Z-score: 311.2  bits: 66.6 E(32554): 5.2e-11
Smith-Waterman score: 443; 35.4% identity (56.5% similar) in 333 aa overlap (16-323:255-547)

                              10        20        30        40     
pF1KB7                MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDL
                                     ::  ::  .:  .: ... :.  ..  . .
CCDS14 DDEEELLEDEEDEDEEEELLEDDEEELLEDDARALL--KEPRRCPVAATGAVAAAAAAAV
          230       240       250       260         270       280  

          50        60        70        80        90       100     
pF1KB7 APNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQG--QQK
       :     .::. : : :.          : .  .: . . : ..    . . ...:  ..:
CCDS14 A-----TEGGELSPKEE----------LLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRK
                 290                 300       310       320       

           110       120       130       140       150       160   
pF1KB7 QKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRK
       :.:.:: ::  ::.::::.: ::::::.: :::::.:. :::.:::::::::::::.::.
CCDS14 QRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE
       330       340       350       360       370       380       

           170       180       190       200         210       220 
pF1KB7 KTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFH--ANDTRWAAAAMPGVSQLP
       :.    . ::  :: :: :   ::.   .  .  :    :  : :. :.:::  ... .:
CCDS14 KAGAQTHPPG--LPFPG-PL--SATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFP
       390         400          410       420       430       440  

              230       240        250       260         270       
pF1KB7 -LPPALGRQQAMAQSLSQCSLAAGPPPNS-MGLSNSLAGSNGAGLQSH--LYQPAF----
        :::  :              :. :: .. .:::. :    ::..  :  . .:::    
CCDS14 SLPPPPGS-------------ASLPPSGAPLGLSTFL----GAAVFRHPAFISPAFGRLF
            450                    460           470       480     

                  280             290       300       310       320
pF1KB7 PGMVP-------ASL---PGPSNVSG---SPQLCSSPDSSDVWRGTSIASLRRKALEHTV
         :.:       :.:   : :. : :   :  : .   ..   :..:::.:: :: ::..
CCDS14 STMAPLTSASTAAALLRQPTPA-VEGAVASGALADPATAAADRRASSIAALRLKAKEHAA
         490       500        510       520       530       540    

                         
pF1KB7 SMSFT             
       ...               
CCDS14 QLTQLNILPGTSTGKEVC
          550       560  




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:27:40 2016 done: Sat Nov  5 16:27:41 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]