FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7972, 411 aa
  1>>>pF1KB7972 411 - 411 aa - 411 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0304+/-0.000341; mu= 19.5098+/- 0.021
 mean_var=76.0937+/-15.836, 0's: 0 Z-trim(115.4): 5  B-trim: 910 in 1/50
 Lambda= 0.147028
 statistics sampled from 25775 (25779) to 25775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.302), width:  16
 Scan time:  8.940

The best scores are:                                      opt bits E(85289)
NP_001034786 (OMIM: 602348) snRNA-activating prote ( 411) 2885 621.3 1.3e-177
XP_016870546 (OMIM: 602348) PREDICTED: snRNA-activ ( 411) 2885 621.3 1.3e-177
XP_016870545 (OMIM: 602348) PREDICTED: snRNA-activ ( 411) 2885 621.3 1.3e-177


>>NP_001034786 (OMIM: 602348) snRNA-activating protein c  (411 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 3309.5  bits: 621.3 E(85289): 1.3e-177
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB7 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB7 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
              370       380       390       400       410 

>>XP_016870546 (OMIM: 602348) PREDICTED: snRNA-activatin  (411 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 3309.5  bits: 621.3 E(85289): 1.3e-177
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB7 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB7 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
              370       380       390       400       410 

>>XP_016870545 (OMIM: 602348) PREDICTED: snRNA-activatin  (411 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 3309.5  bits: 621.3 E(85289): 1.3e-177
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB7 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB7 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
              370       380       390       400       410 




411 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:21:14 2016 done: Sat Nov  5 10:21:15 2016
 Total Scan time:  8.940 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]