FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7972, 411 aa
  1>>>pF1KB7972 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2176+/-0.000749; mu= 18.1956+/- 0.045
 mean_var=73.5801+/-14.801, 0's: 0 Z-trim(109.0): 7  B-trim: 0 in 0/50
 Lambda= 0.149518
 statistics sampled from 10576 (10577) to 10576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.325), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS6478.1 SNAPC3 gene_id:6619|Hs108|chr9          ( 411) 2885 631.4 4.5e-181


>>CCDS6478.1 SNAPC3 gene_id:6619|Hs108|chr9               (411 aa)
 initn: 2885 init1: 2885 opt: 2885  Z-score: 3364.2  bits: 631.4 E(32554): 4.5e-181
Smith-Waterman score: 2885; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KB7 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMY
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KB7 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN
              370       380       390       400       410 




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:21:13 2016 done: Sat Nov  5 10:21:14 2016
 Total Scan time:  3.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]