Result of FASTA (ccds) for
pF1KB7950
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7950, 394 aa
1>>>pF1KB7950 394 - 394 aa - 394 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6705+/-0.000776; mu= 10.0753+/- 0.047
mean_var=207.0744+/-41.432, 0's: 0 Z-trim(117.0): 21 B-trim: 174 in 1/52
Lambda= 0.089127
statistics sampled from 17720 (17740) to 17720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.545), width: 16
Scan time: 3.640
The best scores are: opt bits E(32554)
CCDS53300.1 MYCL gene_id:4610|Hs108|chr1 ( 394) 2775 368.6 5.6e-102
CCDS30682.1 MYCL gene_id:4610|Hs108|chr1 ( 364) 2549 339.5 3e-93
CCDS44117.2 MYCL gene_id:4610|Hs108|chr1 ( 236) 1460 199.3 3.1e-51
CCDS1687.1 MYCN gene_id:4613|Hs108|chr2 ( 464) 465 71.6 1.6e-12
>>CCDS53300.1 MYCL gene_id:4610|Hs108|chr1 (394 aa)
initn: 2775 init1: 2775 opt: 2775 Z-score: 1944.3 bits: 368.6 E(32554): 5.6e-102
Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394)
10 20 30 40 50 60
pF1KB7 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 QHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 KPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYL
310 320 330 340 350 360
370 380 390
pF1KB7 QALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY
::::::::::::::::::::::::::::::::::
CCDS53 QALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY
370 380 390
>>CCDS30682.1 MYCL gene_id:4610|Hs108|chr1 (364 aa)
initn: 2549 init1: 2549 opt: 2549 Z-score: 1787.7 bits: 339.5 E(32554): 3e-93
Smith-Waterman score: 2549; 100.0% identity (100.0% similar) in 364 aa overlap (31-394:1-364)
10 20 30 40 50 60
pF1KB7 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
::::::::::::::::::::::::::::::
CCDS30 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
10 20 30
70 80 90 100 110 120
pF1KB7 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 QHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHP
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB7 KPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYL
280 290 300 310 320 330
370 380 390
pF1KB7 QALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY
::::::::::::::::::::::::::::::::::
CCDS30 QALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY
340 350 360
>>CCDS44117.2 MYCL gene_id:4610|Hs108|chr1 (236 aa)
initn: 1482 init1: 1460 opt: 1460 Z-score: 1033.2 bits: 199.3 E(32554): 3.1e-51
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB7 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MCVCAGCRAAPSRRGAGPLQVAGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQ
:::::::::::::::
CCDS44 PKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPLFG
190 200 210 220 230
>>CCDS1687.1 MYCN gene_id:4613|Hs108|chr2 (464 aa)
initn: 695 init1: 314 opt: 465 Z-score: 338.1 bits: 71.6 E(32554): 1.6e-12
Smith-Waterman score: 595; 36.7% identity (53.1% similar) in 441 aa overlap (52-390:42-460)
30 40 50 60 70 80
pF1KB7 AGGWSEGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGA
:: :.:::::::::.:.:: :: :.. .
CCDS16 MICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRGFAEHS
20 30 40 50 60 70
90 100 110 120 130
pF1KB7 GDPAPGIGP----PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLER
..: . : : :. . ..: . : : : .: .:::::::::::.:::
CCDS16 SEPPSWVTEMLLENELW-GSPAEEDAFGLGGLGGLTPN--PVILQDCMWSGFSAREKLER
80 90 100 110 120
140 150 160
pF1KB7 AVSDRL--------------APGA----P--RGNPPKASA--------------APDCT-
:::..: .::: : ::. :.: : .:.
CCDS16 AVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVD
130 140 150 160 170 180
170 180
pF1KB7 PSL--------EAGNPAPAAPC-----------------PLGEP----------------
:.. . :.:::: : : :
CCDS16 PAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPGGRQTSGGD
190 200 210 220 230 240
190 200 210 220
pF1KB7 -KTQACSGSESPSDS---------ENEEIDVVTVEKRQSLGIRKPVT---ITVRAD--PL
:. . :: .. ::: :.:::::::::::.: . : :: :::: :
CCDS16 HKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAAL
250 260 270 280 290 300
230 240 250 260 270
pF1KB7 DPCMKHFH-------ISIHQQQHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDE
: . . :::: ::::: : .:.: ::... .. :. . .
CCDS16 GPGRAQSSELILKRCLPIHQQ-HNYAA--PSPYVESEDAP---PQKKI--KSEASPRPLK
310 320 330 340 350 360
280 290 300 310 320 330
pF1KB7 EDEEIVSPPPVESEAAQSCHPKPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVP
: :: :.: :. .::.:: .:.:::.:::.::::::: ::.:::.::
CCDS16 S----VIPPK-----AKSLSPR--NSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVP
370 380 390 400
340 350 360 370 380 390
pF1KB7 TLASCSKAPKVVILSKALEYLQALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY
:.. :: :::::.:: ::...: . :... ::..:. ::::: :.: .
CCDS16 ELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
410 420 430 440 450 460
394 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:43:46 2016 done: Sat Nov 5 14:43:46 2016
Total Scan time: 3.640 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]