Result of FASTA (omim) for
pF1KB7947
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7947, 254 aa
1>>>pF1KB7947 254 - 254 aa - 254 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8116+/-0.00029; mu= 10.0892+/- 0.018
mean_var=160.4362+/-32.730, 0's: 0 Z-trim(122.6): 275 B-trim: 34 in 1/49
Lambda= 0.101257
statistics sampled from 40587 (40905) to 40587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.48), width: 16
Scan time: 7.990
The best scores are: opt bits E(85289)
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 1767 269.0 5.7e-72
XP_011523120 (OMIM: 214300,600147) PREDICTED: home ( 227) 1487 228.1 1.1e-59
NP_054705 (OMIM: 214300,600147) homeobox protein M ( 184) 1115 173.6 2.2e-43
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 919 144.9 7.4e-35
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 525 87.7 2.7e-17
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 308 56.0 1.1e-07
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 301 55.0 2.1e-07
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284) 295 54.0 3.3e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 298 54.7 3.4e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 298 54.7 3.4e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 298 54.7 3.4e-07
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 298 54.7 3.4e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 298 54.7 3.4e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 298 54.7 3.4e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 298 54.7 3.4e-07
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 295 54.2 4.5e-07
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 54.2 4.5e-07
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 280 51.7 1.2e-06
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 280 51.7 1.2e-06
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 281 52.0 1.3e-06
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 281 52.1 1.6e-06
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 281 52.1 1.6e-06
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 278 51.6 2e-06
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 276 51.2 2.1e-06
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 275 51.1 2.6e-06
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 275 51.2 3e-06
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 275 51.2 3e-06
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 275 51.3 3.4e-06
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 275 51.3 3.4e-06
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 275 51.3 3.4e-06
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 275 51.3 3.4e-06
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 275 51.3 3.4e-06
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 275 51.3 3.4e-06
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 275 51.3 3.4e-06
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 275 51.4 3.7e-06
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 271 50.5 3.9e-06
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 275 51.4 4.1e-06
>>NP_004518 (OMIM: 214300,600147) homeobox protein MOX-1 (254 aa)
initn: 1767 init1: 1767 opt: 1767 Z-score: 1413.0 bits: 269.0 E(85289): 5.7e-72
Smith-Waterman score: 1767; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
190 200 210 220 230 240
250
pF1KB7 DPEDGDSTASPSSE
::::::::::::::
NP_004 DPEDGDSTASPSSE
250
>>XP_011523120 (OMIM: 214300,600147) PREDICTED: homeobox (227 aa)
initn: 1536 init1: 1487 opt: 1487 Z-score: 1192.6 bits: 228.1 E(85289): 1.1e-59
Smith-Waterman score: 1487; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
:::::::::::::::::::::::::::::::::::.
XP_011 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVRPRSKCGSRTEG
190 200 210 220
250
pF1KB7 DPEDGDSTASPSSE
>>NP_054705 (OMIM: 214300,600147) homeobox protein MOX-1 (184 aa)
initn: 1107 init1: 1107 opt: 1115 Z-score: 900.0 bits: 173.6 E(85289): 2.2e-43
Smith-Waterman score: 1115; 91.0% identity (94.4% similar) in 177 aa overlap (1-177:1-176)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
:::::::::::::::::::::::::::::::::::: .: .:. .: . :.:
NP_054 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS-GQSVVPEPKDEVEACEGRSAHLP
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
NP_054 QWAGP
180
>>NP_001035091 (OMIM: 214300,600147) homeobox protein MO (139 aa)
initn: 919 init1: 919 opt: 919 Z-score: 746.8 bits: 144.9 E(85289): 7.4e-35
Smith-Waterman score: 919; 100.0% identity (100.0% similar) in 139 aa overlap (116-254:1-139)
90 100 110 120 130 140
pF1KB7 PAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETE
::::::::::::::::::::::::::::::
NP_001 MGTSSLGLVDTTGGPGDDYGVLGSTANETE
10 20 30
150 160 170 180 190 200
pF1KB7 KKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIA
40 50 60 70 80 90
210 220 230 240 250
pF1KB7 VNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
100 110 120 130
>>NP_005915 (OMIM: 600535) homeobox protein MOX-2 [Homo (304 aa)
initn: 629 init1: 487 opt: 525 Z-score: 431.5 bits: 87.7 E(85289): 2.7e-17
Smith-Waterman score: 624; 47.5% identity (64.3% similar) in 255 aa overlap (17-233:4-249)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
:..::::.::. :.:: . . ...: . : .. ::
NP_005 MEHPLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YP
10 20 30
70 80 90
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQ-------------------SPNWHFPV---
..:.: . . :.:: .:. :: . . :::.:
NP_005 ELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSS
40 50 60 70 80 90
100 110 120 130 140
pF1KB7 --SDARR----RPNSG--PAGGSKE----MGTSSLGLVDTTGG---PGDDYGVLGSTANE
: ::. .:.:: : ::. ..:::: ::. ::: :: . . :
NP_005 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAE
100 110 120 130 140 150
150 160 170 180 190 200
pF1KB7 TEKKSSRRRK-ESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRY
.::.:. .:: .:::.::. : : .:: :::::::::::.:::::::::::::::::::
NP_005 AEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRY
160 170 180 190 200 210
210 220 230 240 250
pF1KB7 EIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
::::::::.::::::::::::::::::::::
NP_005 EIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAA
220 230 240 250 260 270
NP_005 TLQQTGDSIANEDSHDSDHSSEHAHL
280 290 300
>>NP_001092304 (OMIM: 603354) homeobox protein GBX-1 [Ho (363 aa)
initn: 234 init1: 234 opt: 308 Z-score: 259.2 bits: 56.0 E(85289): 1.1e-07
Smith-Waterman score: 308; 33.5% identity (55.1% similar) in 236 aa overlap (13-240:110-330)
10 20 30 40
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTP
.:: .: . . . .:. . : :
NP_001 AGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAAAAATAARNNPEP
80 90 100 110 120 130
50 60 70 80 90 100
pF1KB7 FSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDAR
. ..:. : : : .: : : : :.: :..: . . :: .
NP_001 GG--RRPEGGLEADELLP---AREKVAEPPP-PPPPH-FSETFPSLPAEGKVY--SSDEE
140 150 160 170 180 190
110 120 130 140 150
pF1KB7 RRPNSG--PAGGSKEM---GTSSL--GLVDTT-GGPGDDYGVLGSTANETEKKSSRRRKE
. :. :::. .: : .: :..:.. :::: ..:: . . :.:
NP_001 KLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPG---ALLGP---KPKLKGSLGTGA
200 210 220 230 240
160 170 180 190 200 210
pF1KB7 SSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQ
. : ..:.:..:::::.::: ::: :: ..::. .: .:: : ::: :
NP_001 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ
250 260 270 280 290 300
220 230 240 250
pF1KB7 VKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
::.:::::: ::::.:.:. : .:.
NP_001 VKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP
310 320 330 340 350 360
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 279 init1: 235 opt: 301 Z-score: 253.9 bits: 55.0 E(85289): 2.1e-07
Smith-Waterman score: 303; 31.5% identity (54.6% similar) in 251 aa overlap (9-239:116-351)
10 20 30
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHY
.:: . : : : . . :.:..: :
NP_055 PPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLP--GFPGGAGGGGGGGGGGPGR
90 100 110 120 130 140
40 50 60 70 80
pF1KB7 PPTP--------FSFHQKPDFLATATAAYPDFSASCLAATPHSLPQ-----EEHIFTE-Q
:.: . ::. : .: : .:: ... :: . : . : :
NP_055 GPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQ
150 160 170 180 190 200
90 100 110 120 130
pF1KB7 HPAFPQ-SPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGD-----DYGVLG
. :. : : . . : ..::..: .: . ::: .. :. . :
NP_055 GSSGPEFSCNSFLQEKAAAATGGTGPGAG--------IGAATGTGGSSEPSACSDHPIPG
210 220 230 240 250
140 150 160 170 180 190
pF1KB7 STANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTR
. .: ::. :. .... : .. .. . ..::.: .:: : ::: :: . ::::
NP_055 CSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTR
260 270 280 290 300 310
200 210 220 230 240 250
pF1KB7 LRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
::::.: :.:.:::::.:::::::: :.. .. :.:
NP_055 DRRYEVARILNLTERQVKIWFQNRRMKMKKM--SKEKCPKGD
320 330 340 350
>>NP_005184 (OMIM: 300025) homeobox protein CDX-4 [Homo (284 aa)
initn: 238 init1: 176 opt: 295 Z-score: 250.3 bits: 54.0 E(85289): 3.3e-07
Smith-Waterman score: 295; 32.3% identity (52.0% similar) in 269 aa overlap (7-251:4-255)
10 20 30 40 50
pF1KB7 MDPAASSCMRSLQPPAPVW-GCLRNPHSEGN---GASGLPHYPPTPFSFHQKPDF-----
::. :. : .. : : .: ..:. :..: : .: : :
NP_005 MYGSCL--LEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMG
10 20 30 40 50
60 70 80 90 100
pF1KB7 LATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRP------
. : . . . ..:.: :.:. .:. :.: ::.:. :
NP_005 YPHMPSMDPHWPSLGVWGSPYSPPREDWSV---YPG-PSSTMGTVPVNDVTSSPAAFCST
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 ---NSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENR
: ::.:: :::. .: ::. : : : . : :: :.. : :
NP_005 DYSNLGPVGG----GTSGSSL------PGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMR
120 130 140 150 160
170 180 190 200 210
pF1KB7 GKPEGSSKAR---KERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWF
. ..:.: : :...: .: ::: :: . :.: :. :.:::: :::::::.::
NP_005 KTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWF
170 180 190 200 210 220
220 230 240 250
pF1KB7 QNRRMKWKRV---KGGQPISPNGQDPEDGDSTASPSSE
:::: : ... : .: . .:. :.:: ::
NP_005 QNRRAKERKMIKKKISQFENSGGSVQSDSDSI-SPGELPNTFFTTPSAVRGFQPIEIQQV
230 240 250 260 270 280
NP_005 IVSE
>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 255 init1: 224 opt: 298 Z-score: 250.3 bits: 54.7 E(85289): 3.4e-07
Smith-Waterman score: 316; 31.5% identity (56.6% similar) in 235 aa overlap (25-242:34-264)
10 20 30 40
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYP------PTPFSFHQK
: : . ::.: : : :. . : :
XP_005 ATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PDFLATA---TAAYPDFSASCLAATP-HSLPQEEHIFTEQHPA-FPQSPNWHFPVSDARR
:. : : . : . :. : : : . . : : :: : :. :
XP_005 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPA---PTPAAPP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 RPNSG--PAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQEN
:.:. : ..:.. .. . ..: .. .:........ . ::...
XP_005 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESC
130 140 150 160 170
170 180 190 200 210
pF1KB7 RG--KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWF
: .: :...... :::.:. :: ::: :: . :: : :: :.: :.:.:::.:.::
XP_005 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF
180 190 200 210 220 230
220 230 240 250
pF1KB7 QNRRMKWKRVKGGQPI--SPNGQDPEDGDSTASPSSE
::::::.:. . :. . : .::.:
XP_005 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSK
240 250 260 270 280 290
>>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 255 init1: 224 opt: 298 Z-score: 250.3 bits: 54.7 E(85289): 3.4e-07
Smith-Waterman score: 316; 31.5% identity (56.6% similar) in 235 aa overlap (25-242:34-264)
10 20 30 40
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYP------PTPFSFHQK
: : . ::.: : : :. . : :
XP_006 ATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 PDFLATA---TAAYPDFSASCLAATP-HSLPQEEHIFTEQHPA-FPQSPNWHFPVSDARR
:. : : . : . :. : : : . . : : :: : :. :
XP_006 AHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPA---PTPAAPP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 RPNSG--PAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQEN
:.:. : ..:.. .. . ..: .. .:........ . ::...
XP_006 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESC
130 140 150 160 170
170 180 190 200 210
pF1KB7 RG--KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWF
: .: :...... :::.:. :: ::: :: . :: : :: :.: :.:.:::.:.::
XP_006 AGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWF
180 190 200 210 220 230
220 230 240 250
pF1KB7 QNRRMKWKRVKGGQPI--SPNGQDPEDGDSTASPSSE
::::::.:. . :. . : .::.:
XP_006 QNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSK
240 250 260 270 280 290
254 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:43:10 2016 done: Sat Nov 5 14:43:11 2016
Total Scan time: 7.990 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]