Result of FASTA (ccds) for
pF1KB7947
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7947, 254 aa
1>>>pF1KB7947 254 - 254 aa - 254 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1351+/-0.000692; mu= 7.8930+/- 0.042
mean_var=148.3149+/-30.714, 0's: 0 Z-trim(115.2): 182 B-trim: 902 in 1/50
Lambda= 0.105313
statistics sampled from 15524 (15728) to 15524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.483), width: 16
Scan time: 2.460
The best scores are: opt bits E(32554)
CCDS11466.1 MEOX1 gene_id:4222|Hs108|chr17 ( 254) 1767 279.1 2e-75
CCDS11467.1 MEOX1 gene_id:4222|Hs108|chr17 ( 184) 1115 179.9 1e-45
CCDS42343.1 MEOX1 gene_id:4222|Hs108|chr17 ( 139) 919 150.1 7.7e-37
CCDS34605.1 MEOX2 gene_id:4223|Hs108|chr7 ( 304) 525 90.5 1.4e-18
>>CCDS11466.1 MEOX1 gene_id:4222|Hs108|chr17 (254 aa)
initn: 1767 init1: 1767 opt: 1767 Z-score: 1467.7 bits: 279.1 E(32554): 2e-75
Smith-Waterman score: 1767; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
190 200 210 220 230 240
250
pF1KB7 DPEDGDSTASPSSE
::::::::::::::
CCDS11 DPEDGDSTASPSSE
250
>>CCDS11467.1 MEOX1 gene_id:4222|Hs108|chr17 (184 aa)
initn: 1107 init1: 1107 opt: 1115 Z-score: 934.2 bits: 179.9 E(32554): 1e-45
Smith-Waterman score: 1115; 91.0% identity (94.4% similar) in 177 aa overlap (1-177:1-176)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTK
:::::::::::::::::::::::::::::::::::: .: .:. .: . :.:
CCDS11 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS-GQSVVPEPKDEVEACEGRSAHLP
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ
CCDS11 QWAGP
180
>>CCDS42343.1 MEOX1 gene_id:4222|Hs108|chr17 (139 aa)
initn: 919 init1: 919 opt: 919 Z-score: 774.9 bits: 150.1 E(32554): 7.7e-37
Smith-Waterman score: 919; 100.0% identity (100.0% similar) in 139 aa overlap (116-254:1-139)
90 100 110 120 130 140
pF1KB7 PAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETE
::::::::::::::::::::::::::::::
CCDS42 MGTSSLGLVDTTGGPGDDYGVLGSTANETE
10 20 30
150 160 170 180 190 200
pF1KB7 KKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIA
40 50 60 70 80 90
210 220 230 240 250
pF1KB7 VNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
100 110 120 130
>>CCDS34605.1 MEOX2 gene_id:4223|Hs108|chr7 (304 aa)
initn: 629 init1: 487 opt: 525 Z-score: 446.8 bits: 90.5 E(32554): 1.4e-18
Smith-Waterman score: 624; 47.5% identity (64.3% similar) in 255 aa overlap (17-233:4-249)
10 20 30 40 50 60
pF1KB7 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
:..::::.::. :.:: . . ...: . : .. ::
CCDS34 MEHPLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YP
10 20 30
70 80 90
pF1KB7 DFSASCLAATPHSLPQEEHIFTEQHPAFPQ-------------------SPNWHFPV---
..:.: . . :.:: .:. :: . . :::.:
CCDS34 ELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSS
40 50 60 70 80 90
100 110 120 130 140
pF1KB7 --SDARR----RPNSG--PAGGSKE----MGTSSLGLVDTTGG---PGDDYGVLGSTANE
: ::. .:.:: : ::. ..:::: ::. ::: :: . . :
CCDS34 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAE
100 110 120 130 140 150
150 160 170 180 190 200
pF1KB7 TEKKSSRRRK-ESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRY
.::.:. .:: .:::.::. : : .:: :::::::::::.:::::::::::::::::::
CCDS34 AEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRY
160 170 180 190 200 210
210 220 230 240 250
pF1KB7 EIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
::::::::.::::::::::::::::::::::
CCDS34 EIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAA
220 230 240 250 260 270
CCDS34 TLQQTGDSIANEDSHDSDHSSEHAHL
280 290 300
254 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:43:09 2016 done: Sat Nov 5 14:43:09 2016
Total Scan time: 2.460 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]