Result of FASTA (ccds) for
pF1KB7944
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7944, 246 aa
1>>>pF1KB7944 246 - 246 aa - 246 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3632+/-0.00079; mu= 8.7704+/- 0.048
mean_var=204.2367+/-39.009, 0's: 0 Z-trim(116.7): 27 B-trim: 53 in 2/51
Lambda= 0.089744
statistics sampled from 17361 (17386) to 17361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.534), width: 16
Scan time: 2.350
The best scores are: opt bits E(32554)
CCDS4857.1 MDFI gene_id:4188|Hs108|chr6 ( 246) 1801 244.4 5.2e-65
CCDS75451.1 MDFI gene_id:4188|Hs108|chr6 ( 185) 1211 167.9 4.3e-42
CCDS55155.1 MDFIC gene_id:29969|Hs108|chr7 ( 246) 611 90.3 1.3e-18
CCDS34737.1 MDFIC gene_id:29969|Hs108|chr7 ( 355) 611 90.5 1.6e-18
>>CCDS4857.1 MDFI gene_id:4188|Hs108|chr6 (246 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 1280.6 bits: 244.4 E(32554): 5.2e-65
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
190 200 210 220 230 240
pF1KB7 GLCFSS
::::::
CCDS48 GLCFSS
>>CCDS75451.1 MDFI gene_id:4188|Hs108|chr6 (185 aa)
initn: 1204 init1: 1204 opt: 1211 Z-score: 869.2 bits: 167.9 E(32554): 4.3e-42
Smith-Waterman score: 1259; 74.8% identity (75.2% similar) in 246 aa overlap (1-246:1-185)
10 20 30 40 50 60
pF1KB7 MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATP
:::::::::::::::::::::::::.:
CCDS75 MYQVSGQRPSGCDAPYGAPSAAPGPGQ---------------------------------
10 20
70 80 90 100 110 120
pF1KB7 MPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
::::::::::::::::::::::::::::::::
CCDS75 ----------------------------PQGNPLGCTPLLPNDSGHPSELGGTRRAGNGA
30 40 50
130 140 150 160 170 180
pF1KB7 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLC
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB7 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECC
120 130 140 150 160 170
pF1KB7 GLCFSS
::::::
CCDS75 GLCFSS
180
>>CCDS55155.1 MDFIC gene_id:29969|Hs108|chr7 (246 aa)
initn: 705 init1: 341 opt: 611 Z-score: 447.9 bits: 90.3 E(32554): 1.3e-18
Smith-Waterman score: 613; 43.4% identity (61.7% similar) in 256 aa overlap (17-246:3-246)
10 20 30 40 50
pF1KB7 MYQVSGQRPSGCDAPYGAPSA-APGPA--QTLSLLPGLEVVTGSTHPAEAAPEEGSLEEA
:: : ::::. : .. : .. ::: :.. .. . :.
CCDS55 MSGAGEALAPGPVGPQRVAEAGGGQL--GST--AQGKCDKDNTEKD
10 20 30 40
60 70 80 90 100
pF1KB7 ATPMPQGNGPGIPQG--LDSTDLDVPT--EAVTCQPQGNP-LGCTPLLPND-------SG
: :... . .: :.. :. : . ::: : : . .:. .:
CCDS55 IT---QATNSHFTHGEMQDQSIWGNPSDGELIRTQPQRLPQLQTSAQVPSGEEIGKIKNG
50 60 70 80 90
110 120 130 140 150
pF1KB7 HPSELGGTR--------RAGNGALGGP---KAHRKLQTHPSLASQGSKKSKSSSKSTTSQ
: . .:. : : :..: : :::.:. :. :. ::::: .. . ::
CCDS55 HTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHRKIQSSLSVNSDISKKSKVNA--VFSQ
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB7 IPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDL
.. :::::::::.:::::::::::::: :.:: :.:: ::::::. ::.
CCDS55 KTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCGDEMGDDCNC
160 170 180 190 200 210
220 230 240
pF1KB7 PCDLDCGILDACCESADCLEICMECCGLCFSS
:::.::::.::::::.:::::::::::.:: :
CCDS55 PCDMDCGIMDACCESSDCLEICMECCGICFPS
220 230 240
>>CCDS34737.1 MDFIC gene_id:29969|Hs108|chr7 (355 aa)
initn: 705 init1: 341 opt: 611 Z-score: 446.0 bits: 90.5 E(32554): 1.6e-18
Smith-Waterman score: 615; 42.5% identity (61.2% similar) in 268 aa overlap (5-246:105-355)
10 20 30
pF1KB7 MYQVSGQRPSGCDAPYGAPSA-APGPA--QTLSL
:..:: . :: : ::::. : ..
CCDS34 AVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMS-----GAGEALAPGPVGPQRVAE
80 90 100 110 120
40 50 60 70 80
pF1KB7 LPGLEVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIPQG--LDSTDLDVPT--EAVTC
: .. ::: :.. .. . :. : :... . .: :.. :. : .
CCDS34 AGGGQL--GST--AQGKCDKDNTEKDIT---QATNSHFTHGEMQDQSIWGNPSDGELIRT
130 140 150 160 170 180
90 100 110 120
pF1KB7 QPQGNP-LGCTPLLPND-------SGHPSELGGTR--------RAGNGALGGP---KAHR
::: : : . .:. .:: . .:. : : :..: : ::
CCDS34 QPQRLPQLQTSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHR
190 200 210 220 230 240
130 140 150 160 170 180
pF1KB7 KLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCAT
:.:. :. :. ::::: . .. :: .. :::::::::.:::::::::::::: :.
CCDS34 KIQSSLSVNSDISKKSKVN--AVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQAS
250 260 270 280 290 300
190 200 210 220 230 240
pF1KB7 CGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS
:: :.:: ::::::. ::. :::.::::.::::::.:::::::::::.:: :
CCDS34 CGICTSEA---CCCCCGDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS
310 320 330 340 350
246 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:42:41 2016 done: Sat Nov 5 14:42:42 2016
Total Scan time: 2.350 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]