Result of FASTA (omim) for
pF1KB7942
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7942, 245 aa
1>>>pF1KB7942 245 - 245 aa - 245 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7367+/-0.000338; mu= 14.3391+/- 0.022
mean_var=125.6754+/-25.188, 0's: 0 Z-trim(118.3): 304 B-trim: 24 in 1/52
Lambda= 0.114406
statistics sampled from 30761 (31142) to 30761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.365), width: 16
Scan time: 7.190
The best scores are: opt bits E(85289)
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 1592 273.3 2.6e-73
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 1304 225.8 5e-59
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 1285 222.6 4.1e-58
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 877 155.4 9.1e-38
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 755 135.1 8.8e-32
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 356 69.4 7.6e-12
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 356 69.4 7.6e-12
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 356 69.6 9.8e-12
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 356 69.6 9.8e-12
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 356 69.6 9.8e-12
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 356 69.6 9.8e-12
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 356 69.6 1e-11
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 356 69.6 1e-11
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 356 69.6 1e-11
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 356 69.6 1e-11
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 353 69.0 1.2e-11
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 354 69.4 1.5e-11
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 352 68.9 1.5e-11
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 343 67.4 4.2e-11
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 343 67.4 4.2e-11
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 341 67.0 4.5e-11
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 343 67.5 4.7e-11
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 343 67.5 4.7e-11
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 343 67.5 4.7e-11
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 342 67.3 4.8e-11
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 343 67.6 4.9e-11
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 336 66.1 7.4e-11
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 330 65.1 1.4e-10
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 328 65.1 2.8e-10
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 321 63.4 3.1e-10
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 322 63.7 3.2e-10
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 321 63.7 4.7e-10
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 321 63.9 6e-10
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 321 63.9 6.1e-10
XP_006713790 (OMIM: 602504) PREDICTED: short statu ( 343) 314 62.6 1e-09
NP_003021 (OMIM: 602504) short stature homeobox pr ( 355) 314 62.6 1.1e-09
NP_006874 (OMIM: 312865,400020) short stature home ( 225) 311 61.9 1.1e-09
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 311 61.9 1.1e-09
NP_001157150 (OMIM: 602504) short stature homeobox ( 319) 311 62.0 1.4e-09
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 311 62.1 1.4e-09
NP_006875 (OMIM: 602504) short stature homeobox pr ( 331) 311 62.1 1.4e-09
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 310 61.9 1.6e-09
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 310 61.9 1.6e-09
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 310 61.9 1.6e-09
XP_016862543 (OMIM: 602504) PREDICTED: short statu ( 204) 305 60.8 2.1e-09
XP_016862542 (OMIM: 602504) PREDICTED: short statu ( 204) 305 60.8 2.1e-09
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 304 60.8 2.6e-09
NP_000442 (OMIM: 312865,400020) short stature home ( 292) 303 60.7 3.3e-09
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 303 60.7 3.5e-09
XP_006713791 (OMIM: 602504) PREDICTED: short statu ( 190) 297 59.5 4.9e-09
>>NP_073207 (OMIM: 167420,202650) paired mesoderm homeob (245 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1437.0 bits: 273.3 E(85289): 2.6e-73
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KB7 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
190 200 210 220 230 240
pF1KB7 VPTVN
:::::
NP_073 VPTVN
>>NP_008833 (OMIM: 167420,202650) paired mesoderm homeob (217 aa)
initn: 1304 init1: 1304 opt: 1304 Z-score: 1180.7 bits: 225.8 E(85289): 5e-59
Smith-Waterman score: 1304; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)
10 20 30 40 50 60
pF1KB7 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQ
:::::::::::::::::::
NP_008 PRPAPRPTDYLSWGTASPYRSSSLPRCCLHEGLHNGF
190 200 210
>>XP_006711451 (OMIM: 167420,202650) PREDICTED: paired m (198 aa)
initn: 1285 init1: 1285 opt: 1285 Z-score: 1164.2 bits: 222.6 E(85289): 4.1e-58
Smith-Waterman score: 1285; 100.0% identity (100.0% similar) in 198 aa overlap (48-245:1-198)
20 30 40 50 60 70
pF1KB7 RLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTP
::::::::::::::::::::::::::::::
XP_006 MVAAQADENVGEAGRSLLESPGLTSGSDTP
10 20 30
80 90 100 110 120 130
pF1KB7 QQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEAR
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB7 VQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTAS
100 110 120 130 140 150
200 210 220 230 240
pF1KB7 PYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQVPTVN
::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PYSAMATYSATCANNSPAQGINMANSIANLRLKAKEYSLQRNQVPTVN
160 170 180 190
>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot (253 aa)
initn: 868 init1: 492 opt: 877 Z-score: 799.1 bits: 155.4 E(85289): 9.1e-38
Smith-Waterman score: 878; 62.7% identity (78.7% similar) in 249 aa overlap (12-245:12-253)
10 20 30 40 50
pF1KB7 MTSSYGHVLERQPALG-GRLDSPGNL---DTLQAKKNFSVSHLLDLEE---AGDMVA---
.:::: : : : : ::.::::::::::::: :: ..:
NP_057 MDSAAAAFALDKPALGPGPPPPPPALGPGDCAQARKNFSVSHLLDLEEVAAAGRLAARPG
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 AQADENVGEAGRSLLESPGLTSGSDTPQQDND----QLNSEEKKKRKQRRNRTTFNSSQL
:.:. : :.: : : .:::.. ::.. .: :.:.::::::::::::::
NP_057 ARAEAREG-AAR---EPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQL
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 QALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLK
:::::::::::::::::::.:::::::.::::::::::::::::::::::::...:::::
NP_057 QALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLK
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 SYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQ-GINMANSIA
::: .. :.:::..:::. ::::: ..::::.. :: ....:: :.:::::::
NP_057 SYSQEA-AIEQPVAPRPTALSPDYLSWTASSPYSTVPPYSP--GSSGPATPGVNMANSIA
180 190 200 210 220 230
230 240
pF1KB7 NLRLKAKEYSLQRNQVPTVN
.:::::::.::...::::::
NP_057 SLRLKAKEFSLHHSQVPTVN
240 250
>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm (193 aa)
initn: 750 init1: 492 opt: 755 Z-score: 691.6 bits: 135.1 E(85289): 8.8e-32
Smith-Waterman score: 755; 73.3% identity (90.1% similar) in 161 aa overlap (86-245:36-193)
60 70 80 90 100 110
pF1KB7 NVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFER
: :.:.:::::::::::::::::::::::
XP_016 RETGPERSGHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFER
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB7 THYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAV
::::::::::.:::::::.::::::::::::::::::::::::...:::::::: .. :.
XP_016 THYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQEA-AI
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB7 EQPIVPRPAPRPTDYLSWGTASPYSAMATYSATCANNSPAQ-GINMANSIANLRLKAKEY
:::..:::. ::::: ..::::.. :: ....:: :.:::::::.:::::::.
XP_016 EQPVAPRPTALSPDYLSWTASSPYSTVPPYSP--GSSGPATPGVNMANSIASLRLKAKEF
130 140 150 160 170 180
240
pF1KB7 SLQRNQVPTVN
::...::::::
XP_016 SLHHSQVPTVN
190
>>NP_001297089 (OMIM: 106210,120430,136520,148190,165550 (286 aa)
initn: 298 init1: 298 opt: 356 Z-score: 333.7 bits: 69.4 E(85289): 7.6e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:45-229)
40 50 60 70 80 90
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
:. : ...: .. .:.:. . . . :::
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
.::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
80 90 100 110 120 130
160 170 180 190 200
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
..:: :. :. :.: ::: :.:. :.. .. :. . : ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
140 150 160 170 180 190
210 220 230 240
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN
: ...:::.. . ... :: . :.::
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
200 210 220 230 240
NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
250 260 270 280
>>NP_001297090 (OMIM: 106210,120430,136520,148190,165550 (286 aa)
initn: 298 init1: 298 opt: 356 Z-score: 333.7 bits: 69.4 E(85289): 7.6e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:45-229)
40 50 60 70 80 90
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
:. : ...: .. .:.:. . . . :::
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
.::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
80 90 100 110 120 130
160 170 180 190 200
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
..:: :. :. :.: ::: :.:. :.. .. :. . : ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
140 150 160 170 180 190
210 220 230 240
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN
: ...:::.. . ... :: . :.::
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
200 210 220 230 240
NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
250 260 270 280
>>NP_001245394 (OMIM: 106210,120430,136520,148190,165550 (422 aa)
initn: 298 init1: 298 opt: 356 Z-score: 331.7 bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)
40 50 60 70 80 90
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
:. : ...: .. .:.:. . . . :::
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
.::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
220 230 240 250 260 270
160 170 180 190 200
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
..:: :. :. :.: ::: :.:. :.. .. :. . : ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
280 290 300 310 320
210 220 230 240
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN
: ...:::.. . ... :: . :.::
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
330 340 350 360 370 380
NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
390 400 410 420
>>NP_000271 (OMIM: 106210,120430,136520,148190,165550,19 (422 aa)
initn: 298 init1: 298 opt: 356 Z-score: 331.7 bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)
40 50 60 70 80 90
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
:. : ...: .. .:.:. . . . :::
NP_000 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
.::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_000 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
220 230 240 250 260 270
160 170 180 190 200
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
..:: :. :. :.: ::: :.:. :.. .. :. . : ::::
NP_000 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
280 290 300 310 320
210 220 230 240
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN
: ...:::.. . ... :: . :.::
NP_000 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
330 340 350 360 370 380
NP_000 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
390 400 410 420
>>NP_001245393 (OMIM: 106210,120430,136520,148190,165550 (422 aa)
initn: 298 init1: 298 opt: 356 Z-score: 331.7 bits: 69.6 E(85289): 9.8e-12
Smith-Waterman score: 356; 38.2% identity (66.0% similar) in 191 aa overlap (66-245:181-365)
40 50 60 70 80 90
pF1KB7 VSHLLDLEEAGDMVAAQADENVGEAGRSLLESPGLTSGS-DTPQQDNDQLNSEEKKKRKQ
:. : ...: .. .:.:. . . . :::
NP_001 GQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKL
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 RRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER
.::::.:.. :..:::. ::::::::.:.:: :: ...: :::.::::.:::::.::.:.
NP_001 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK
220 230 240 250 260 270
160 170 180 190 200
pF1KB7 AMLANKNASLLKSY----SGDVTAVEQPIVPRPAPRPTDYLSWGTASPYSAMA---TYSA
..:: :. :. :.: ::: :.:. :.. .. :. . : ::::
NP_001 LRNQRRQASNTPSHIPISSSFSTSVYQPI-PQPTT-PVSSFTSGSMLGRTDTALTNTYSA
280 290 300 310 320
210 220 230 240
pF1KB7 TCANNSPAQGINMANSIAN---LRLKAKEYSLQRNQVPTVN
: ...:::.. . ... :: . :.::
NP_001 L----PPMPSFTMANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQ
330 340 350 360 370 380
NP_001 PMGTSGTTSTGLISPGVSVPVQVPGSEPDMSQYWPRLQ
390 400 410 420
245 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:14:03 2016 done: Sat Nov 5 10:14:04 2016
Total Scan time: 7.190 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]