FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7938, 233 aa
  1>>>pF1KB7938 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3796+/-0.000647; mu= 10.9537+/- 0.040
 mean_var=97.6082+/-19.181, 0's: 0 Z-trim(114.1): 5  B-trim: 0 in 0/52
 Lambda= 0.129817
 statistics sampled from 14640 (14645) to 14640 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.45), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS704.1 BCL10 gene_id:8915|Hs108|chr1            ( 233) 1513 292.5 1.6e-79


>>CCDS704.1 BCL10 gene_id:8915|Hs108|chr1                 (233 aa)
 initn: 1513 init1: 1513 opt: 1513  Z-score: 1541.4  bits: 292.5 E(32554): 1.6e-79
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KB7 MEPTAPSLTEEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MEPTAPSLTEEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SRKRAGKLLDYLQENPKGLDTLVESIRREKTQNFLIQKITDEVLKLRNIKLEHLKGLKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SRKRAGKLLDYLQENPKGLDTLVESIRREKTQNFLIQKITDEVLKLRNIKLEHLKGLKCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SCEPFPDGATNNLSRSNSDESNFSEKLRASTVMYHPEGESSTTPFFSTNSSLNLPVLEVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SCEPFPDGATNNLSRSNSDESNFSEKLRASTVMYHPEGESSTTPFFSTNSSLNLPVLEVG
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KB7 RTENTIFSSTTLPRPGDPGAPPLPPDLQLEEEGTCANSSEMFLPLRSRTVSRQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RTENTIFSSTTLPRPGDPGAPPLPPDLQLEEEGTCANSSEMFLPLRSRTVSRQ
              190       200       210       220       230   




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:13:24 2016 done: Sat Nov  5 10:13:25 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]