Result of FASTA (ccds) for
pF1KB7935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7935, 371 aa
1>>>pF1KB7935 371 - 371 aa - 371 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7431+/-0.00081; mu= 11.3041+/- 0.049
mean_var=124.2848+/-24.646, 0's: 0 Z-trim(112.0): 73 B-trim: 0 in 0/50
Lambda= 0.115044
statistics sampled from 12770 (12844) to 12770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.395), width: 16
Scan time: 3.160
The best scores are: opt bits E(32554)
CCDS1419.1 ELF3 gene_id:1999|Hs108|chr1 ( 371) 2547 433.5 1.4e-121
CCDS55753.1 EHF gene_id:26298|Hs108|chr11 ( 277) 584 107.6 1.4e-23
CCDS7894.1 EHF gene_id:26298|Hs108|chr11 ( 300) 581 107.1 2.1e-23
CCDS55752.1 EHF gene_id:26298|Hs108|chr11 ( 322) 581 107.1 2.2e-23
CCDS58129.1 ELF5 gene_id:2001|Hs108|chr11 ( 160) 465 87.7 7.9e-18
CCDS73273.1 ELF5 gene_id:2001|Hs108|chr11 ( 187) 465 87.7 9e-18
CCDS7893.1 ELF5 gene_id:2001|Hs108|chr11 ( 255) 465 87.8 1.1e-17
CCDS7892.1 ELF5 gene_id:2001|Hs108|chr11 ( 265) 465 87.8 1.2e-17
>>CCDS1419.1 ELF3 gene_id:1999|Hs108|chr1 (371 aa)
initn: 2547 init1: 2547 opt: 2547 Z-score: 2296.0 bits: 433.5 E(32554): 1.4e-121
Smith-Waterman score: 2547; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)
10 20 30 40 50 60
pF1KB7 MAATCEISNIFSNYFSAMYSSEDSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAATCEISNIFSNYFSAMYSSEDSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LHAQLRDLTSSSSDELSWIIELLEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LHAQLRDLTSSSSDELSWIIELLEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PGSCGAGAPSPGSSDVSTAGTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGSCGAGAPSPGSSDVSTAGTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSG
310 320 330 340 350 360
370
pF1KB7 WKEEEVLQSRN
:::::::::::
CCDS14 WKEEEVLQSRN
370
>>CCDS55753.1 EHF gene_id:26298|Hs108|chr11 (277 aa)
initn: 720 init1: 581 opt: 584 Z-score: 536.9 bits: 107.6 E(32554): 1.4e-23
Smith-Waterman score: 644; 39.6% identity (59.7% similar) in 313 aa overlap (53-365:36-276)
30 40 50 60 70 80
pF1KB7 DSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVEK
: ..: .::.:.: :: .:... ..
CCDS55 GGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQHLLDT
10 20 30 40 50 60
90 100 110 120 130 140
pF1KB7 NKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLTSSSSDELSWIIEL
:. ::. : :.. :..: ::. .:.:. . : :. :...:. .:.:
CCDS55 NQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQ--------HLKW----
70 80 90 100 110
150 160 170 180 190 200
pF1KB7 LEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYHPGSCGAGAPSPGSSDVSTAGTG
.:: .: .. .. . . ... : .:
CCDS55 -----------------------------NGQCSSDLFQSTHNVIVKTE-QTEPSIMNTW
120 130 140
210 220 230 240 250 260
pF1KB7 ASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLE
... . . :: : .: : : :. :: : : :
CCDS55 KDENYLYDTNYGSTVAESP-DMK----------KEQDP---------PAK-------C--
150 160 170
270 280 290 300 310 320
pF1KB7 GKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNS
. .:: ::::::::::::::..:. : ::.:::.: ::::.::.:::::::::.::.::
CCDS55 -HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNS
180 190 200 210 220 230
330 340 350 360 370
pF1KB7 NMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKEEEVLQSRN
.::::::::::::::::::::::::::::::::::. ::.:.:
CCDS55 SMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN
240 250 260 270
>>CCDS7894.1 EHF gene_id:26298|Hs108|chr11 (300 aa)
initn: 720 init1: 581 opt: 581 Z-score: 533.8 bits: 107.1 E(32554): 2.1e-23
Smith-Waterman score: 671; 40.2% identity (61.1% similar) in 316 aa overlap (53-365:36-299)
30 40 50 60 70 80
pF1KB7 DSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVEK
: ..: .::.:.: :: .:... ..
CCDS78 GGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQHLLDT
10 20 30 40 50 60
90 100 110 120 130
pF1KB7 NKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLT---SSSSDELSWI
:. ::. : :.. :..: ::. .:.:. . : :. :...:. : . ::: ..
CCDS78 NQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQST
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB7 IELLEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYHPGSCGAGAPSPGSSDVSTA
... : : .:. ... .. . . . :. . :. :
CCDS78 HNVIVKT-----EQTEPS-----------IMNTWKDENYLYDTNYGSTVDLLDSKTFCRA
130 140 150 160
200 210 220 230 240 250
pF1KB7 GTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGDPKHGKRKRGRPRKLSKEYWD
. . .:: : .: : : :. :: : :
CCDS78 QISMTTTSHLP------VAESP-DMK----------KEQDP---------PAK-------
170 180 190
260 270 280 290 300 310
pF1KB7 CLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKK
: . .:: ::::::::::::::..:. : ::.:::.: ::::.::.:::::::::.::
CCDS78 C---HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKK
200 210 220 230 240 250
320 330 340 350 360 370
pF1KB7 KNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKEEEVLQSRN
.::.::::::::::::::::::::::::::::::::::. ::.:.:
CCDS78 NNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN
260 270 280 290 300
>>CCDS55752.1 EHF gene_id:26298|Hs108|chr11 (322 aa)
initn: 720 init1: 581 opt: 581 Z-score: 533.3 bits: 107.1 E(32554): 2.2e-23
Smith-Waterman score: 671; 40.2% identity (61.1% similar) in 316 aa overlap (53-365:58-321)
30 40 50 60 70 80
pF1KB7 DSTLASVPPAATFGADDLVLTLSNPQMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVEK
: ..: .::.:.: :: .:... ..
CCDS55 GGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGFFGGQWHEIHPQYWTKYQVWEWLQHLLDT
30 40 50 60 70 80
90 100 110 120 130
pF1KB7 NKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDLT---SSSSDELSWI
:. ::. : :.. :..: ::. .:.:. . : :. :...:. : . ::: ..
CCDS55 NQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHLKWNGQCSSDLFQST
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB7 IELLEKDGMAFQEALDPGPFDQGSPFAQELLDDGQQASPYHPGSCGAGAPSPGSSDVSTA
... : : .:. ... .. . . . :. . :. :
CCDS55 HNVIVKT-----EQTEPS-----------IMNTWKDENYLYDTNYGSTVDLLDSKTFCRA
150 160 170 180 190
200 210 220 230 240 250
pF1KB7 GTGASRSSHSSDSGGSDVDLDPTDGKLFPSDGFRDCKKGDPKHGKRKRGRPRKLSKEYWD
. . .:: : .: : : :. :: : :
CCDS55 QISMTTTSHLP------VAESP-DMK----------KEQDP---------PAK-------
200 210
260 270 280 290 300 310
pF1KB7 CLEGKKSKHAPRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKK
: . .:: ::::::::::::::..:. : ::.:::.: ::::.::.:::::::::.::
CCDS55 C---HTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKK
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB7 KNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSSGWKEEEVLQSRN
.::.::::::::::::::::::::::::::::::::::. ::.:.:
CCDS55 NNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN
280 290 300 310 320
>>CCDS58129.1 ELF5 gene_id:2001|Hs108|chr11 (160 aa)
initn: 459 init1: 368 opt: 465 Z-score: 433.5 bits: 87.7 E(32554): 7.9e-18
Smith-Waterman score: 465; 58.3% identity (87.0% similar) in 108 aa overlap (259-366:56-160)
230 240 250 260 270 280
pF1KB7 SDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPEL
:: ..:. . ...:::::.::.:. ::
CCDS58 LFSNEEYYPAFEHQTDADSNCLKTSGIKSQDC--HSHSRTSLQSSHLWEFVRDLLLSPEE
30 40 50 60 70 80
290 300 310 320 330 340
pF1KB7 NEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGR
: :...::.:..:.:. ..:::.:..:::.:::. :::::::::.::::: :::::: :
CCDS58 NCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-R
90 100 110 120 130 140
350 360 370
pF1KB7 RLVYKFGKNSSGWKEEEVLQSRN
:::::::::. ::.:...
CCDS58 RLVYKFGKNAHGWQEDKL
150 160
>>CCDS73273.1 ELF5 gene_id:2001|Hs108|chr11 (187 aa)
initn: 459 init1: 368 opt: 465 Z-score: 432.6 bits: 87.7 E(32554): 9e-18
Smith-Waterman score: 465; 58.3% identity (87.0% similar) in 108 aa overlap (259-366:83-187)
230 240 250 260 270 280
pF1KB7 SDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPEL
:: ..:. . ...:::::.::.:. ::
CCDS73 SFFNDAEESKATIKDYADSNCLKTSGIKSQDC--HSHSRTSLQSSHLWEFVRDLLLSPEE
60 70 80 90 100 110
290 300 310 320 330 340
pF1KB7 NEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGR
: :...::.:..:.:. ..:::.:..:::.:::. :::::::::.::::: :::::: :
CCDS73 NCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-R
120 130 140 150 160
350 360 370
pF1KB7 RLVYKFGKNSSGWKEEEVLQSRN
:::::::::. ::.:...
CCDS73 RLVYKFGKNAHGWQEDKL
170 180
>>CCDS7893.1 ELF5 gene_id:2001|Hs108|chr11 (255 aa)
initn: 481 init1: 368 opt: 465 Z-score: 430.7 bits: 87.8 E(32554): 1.1e-17
Smith-Waterman score: 465; 58.3% identity (87.0% similar) in 108 aa overlap (259-366:151-255)
230 240 250 260 270 280
pF1KB7 SDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPEL
:: ..:. . ...:::::.::.:. ::
CCDS78 SFFNDAEESKATIKDYADSNCLKTSGIKSQDC--HSHSRTSLQSSHLWEFVRDLLLSPEE
130 140 150 160 170
290 300 310 320 330 340
pF1KB7 NEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGR
: :...::.:..:.:. ..:::.:..:::.:::. :::::::::.::::: :::::: :
CCDS78 NCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-R
180 190 200 210 220 230
350 360 370
pF1KB7 RLVYKFGKNSSGWKEEEVLQSRN
:::::::::. ::.:...
CCDS78 RLVYKFGKNAHGWQEDKL
240 250
>>CCDS7892.1 ELF5 gene_id:2001|Hs108|chr11 (265 aa)
initn: 481 init1: 368 opt: 465 Z-score: 430.5 bits: 87.8 E(32554): 1.2e-17
Smith-Waterman score: 465; 58.3% identity (87.0% similar) in 108 aa overlap (259-366:161-265)
230 240 250 260 270 280
pF1KB7 SDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPEL
:: ..:. . ...:::::.::.:. ::
CCDS78 SFFNDAEESKATIKDYADSNCLKTSGIKSQDC--HSHSRTSLQSSHLWEFVRDLLLSPEE
140 150 160 170 180
290 300 310 320 330 340
pF1KB7 NEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGR
: :...::.:..:.:. ..:::.:..:::.:::. :::::::::.::::: :::::: :
CCDS78 NCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-R
190 200 210 220 230 240
350 360 370
pF1KB7 RLVYKFGKNSSGWKEEEVLQSRN
:::::::::. ::.:...
CCDS78 RLVYKFGKNAHGWQEDKL
250 260
371 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:40:14 2016 done: Sat Nov 5 14:40:14 2016
Total Scan time: 3.160 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]