FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7930, 213 aa
  1>>>pF1KB7930 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5485+/-0.000649; mu= 6.4643+/- 0.040
 mean_var=148.0502+/-29.698, 0's: 0 Z-trim(117.0): 15  B-trim: 146 in 1/54
 Lambda= 0.105407
 statistics sampled from 17679 (17694) to 17679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.544), width:  16
 Scan time:  2.270

The best scores are:                                      opt bits E(32554)
CCDS6136.1 THAP1 gene_id:55145|Hs108|chr8          ( 213) 1486 236.0 1.3e-62


>>CCDS6136.1 THAP1 gene_id:55145|Hs108|chr8               (213 aa)
 initn: 1486 init1: 1486 opt: 1486  Z-score: 1237.5  bits: 236.0 E(32554): 1.3e-62
Smith-Waterman score: 1486; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 DCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQLPPPPLPPPVSQVDAAIGLLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQLPPPPLPPPVSQVDAAIGLLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PPLQTPVNLSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PPLQTPVNLSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKLKTAQQRCRRQERQLEKL
              130       140       150       160       170       180

              190       200       210   
pF1KB7 KEVVHFQKEKDDVSERGYVILPNDYFEIVEVPA
       :::::::::::::::::::::::::::::::::
CCDS61 KEVVHFQKEKDDVSERGYVILPNDYFEIVEVPA
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:11:43 2016 done: Sat Nov  5 10:11:43 2016
 Total Scan time:  2.270 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]