Result of FASTA (omim) for
pF1KB7919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7919, 180 aa
1>>>pF1KB7919 180 - 180 aa - 180 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7035+/-0.000266; mu= 2.7838+/- 0.017
mean_var=131.7712+/-25.955, 0's: 0 Z-trim(123.1): 43 B-trim: 0 in 0/58
Lambda= 0.111729
statistics sampled from 42275 (42322) to 42275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.496), width: 16
Scan time: 6.650
The best scores are: opt bits E(85289)
NP_005739 (OMIM: 607534) YY1-associated factor 2 i ( 180) 1188 201.4 6.4e-52
NP_001177906 (OMIM: 607534) YY1-associated factor ( 138) 830 143.7 1.2e-34
XP_011536031 (OMIM: 607534) PREDICTED: YY1-associa ( 159) 823 142.6 3e-34
XP_006719248 (OMIM: 607534) PREDICTED: YY1-associa ( 177) 823 142.6 3.2e-34
XP_006719247 (OMIM: 607534) PREDICTED: YY1-associa ( 182) 823 142.6 3.3e-34
XP_016874158 (OMIM: 607534) PREDICTED: YY1-associa ( 187) 823 142.6 3.4e-34
NP_001177908 (OMIM: 607534) YY1-associated factor ( 204) 823 142.6 3.7e-34
XP_011536030 (OMIM: 607534) PREDICTED: YY1-associa ( 238) 823 142.6 4.2e-34
NP_001307009 (OMIM: 607534) YY1-associated factor ( 171) 813 141.0 9.6e-34
NP_036366 (OMIM: 607535) RING1 and YY1-binding pro ( 228) 528 95.1 8.3e-20
NP_001177909 (OMIM: 607534) YY1-associated factor ( 117) 388 72.4 2.9e-13
XP_016874159 (OMIM: 607534) PREDICTED: YY1-associa ( 120) 375 70.3 1.3e-12
>>NP_005739 (OMIM: 607534) YY1-associated factor 2 isofo (180 aa)
initn: 1188 init1: 1188 opt: 1188 Z-score: 1053.1 bits: 201.4 E(85289): 6.4e-52
Smith-Waterman score: 1188; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
130 140 150 160 170 180
>>NP_001177906 (OMIM: 607534) YY1-associated factor 2 is (138 aa)
initn: 830 init1: 830 opt: 830 Z-score: 743.0 bits: 143.7 E(85289): 1.2e-34
Smith-Waterman score: 830; 97.8% identity (98.5% similar) in 135 aa overlap (46-180:4-138)
20 30 40 50 60 70
pF1KB7 PSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSK
: . ::::::::::::::::::::::::::
NP_001 MGDKKSPTRKPRPVSQLVAQQVTQQFVPPTQSK
10 20 30
80 90 100 110 120 130
pF1KB7 KEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTK
40 50 60 70 80 90
140 150 160 170 180
pF1KB7 SPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
100 110 120 130
>>XP_011536031 (OMIM: 607534) PREDICTED: YY1-associated (159 aa)
initn: 823 init1: 823 opt: 823 Z-score: 736.0 bits: 142.6 E(85289): 3e-34
Smith-Waterman score: 823; 99.2% identity (99.2% similar) in 132 aa overlap (49-180:28-159)
20 30 40 50 60 70
pF1KB7 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEK
: ::::::::::::::::::::::::::::
XP_011 MVCGEGSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
10 20 30 40 50
80 90 100 110 120 130
pF1KB7 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
60 70 80 90 100 110
140 150 160 170 180
pF1KB7 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::
XP_011 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
120 130 140 150
>>XP_006719248 (OMIM: 607534) PREDICTED: YY1-associated (177 aa)
initn: 823 init1: 823 opt: 823 Z-score: 735.3 bits: 142.6 E(85289): 3.2e-34
Smith-Waterman score: 823; 99.2% identity (99.2% similar) in 132 aa overlap (49-180:46-177)
20 30 40 50 60 70
pF1KB7 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEK
: ::::::::::::::::::::::::::::
XP_006 VLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB7 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
80 90 100 110 120 130
140 150 160 170 180
pF1KB7 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::
XP_006 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
140 150 160 170
>>XP_006719247 (OMIM: 607534) PREDICTED: YY1-associated (182 aa)
initn: 823 init1: 823 opt: 823 Z-score: 735.1 bits: 142.6 E(85289): 3.3e-34
Smith-Waterman score: 823; 99.2% identity (99.2% similar) in 132 aa overlap (49-180:51-182)
20 30 40 50 60 70
pF1KB7 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEK
: ::::::::::::::::::::::::::::
XP_006 VLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB7 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
90 100 110 120 130 140
140 150 160 170 180
pF1KB7 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::
XP_006 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
150 160 170 180
>>XP_016874158 (OMIM: 607534) PREDICTED: YY1-associated (187 aa)
initn: 823 init1: 823 opt: 823 Z-score: 734.9 bits: 142.6 E(85289): 3.4e-34
Smith-Waterman score: 823; 99.2% identity (99.2% similar) in 132 aa overlap (49-180:56-187)
20 30 40 50 60 70
pF1KB7 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEK
: ::::::::::::::::::::::::::::
XP_016 VLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEK
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB7 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPP
90 100 110 120 130 140
140 150 160 170 180
pF1KB7 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
150 160 170 180
>>NP_001177908 (OMIM: 607534) YY1-associated factor 2 is (204 aa)
initn: 823 init1: 823 opt: 823 Z-score: 734.3 bits: 142.6 E(85289): 3.7e-34
Smith-Waterman score: 1130; 88.2% identity (88.2% similar) in 204 aa overlap (1-180:1-204)
10 20 30 40 50
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTR---------
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRSTLFEVIVS
10 20 30 40 50 60
60 70 80 90
pF1KB7 ---------------KPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASRTKEPLKFPISGRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSD
130 140 150 160 170 180
160 170 180
pF1KB7 NTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::
NP_001 NTERGMSRSSSPRGEASSLNGESH
190 200
>>XP_011536030 (OMIM: 607534) PREDICTED: YY1-associated (238 aa)
initn: 823 init1: 823 opt: 823 Z-score: 733.3 bits: 142.6 E(85289): 4.2e-34
Smith-Waterman score: 863; 72.6% identity (72.6% similar) in 212 aa overlap (27-180:27-238)
10 20 30 40 50
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTR---------
:::::::::::::::::::::::::
XP_011 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRMKNHEIISF
10 20 30 40 50 60
60
pF1KB7 -------------------------------------------------KPRPVSQLVAQ
:::::::::::
XP_011 LKEGEKKKLDHLPVTGVLLLGNLHRSTLFEVIVSASRTKEPLKFPISGRKPRPVSQLVAQ
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB7 QVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGD
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB7 LTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
190 200 210 220 230
>>NP_001307009 (OMIM: 607534) YY1-associated factor 2 is (171 aa)
initn: 813 init1: 813 opt: 813 Z-score: 726.8 bits: 141.0 E(85289): 9.6e-34
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 129 aa overlap (52-180:43-171)
30 40 50 60 70 80
pF1KB7 YWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDK
::::::::::::::::::::::::::::::
NP_001 REPGYHLVEQSCWLKPLPRNLGHSLFWTVWKPRPVSQLVAQQVTQQFVPPTQSKKEKKDK
20 30 40 50 60 70
90 100 110 120 130 140
pF1KB7 VEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASS
80 90 100 110 120 130
150 160 170 180
pF1KB7 AASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
:::::::::::::::::::::::::::::::::::::::
NP_001 AASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
140 150 160 170
>>NP_036366 (OMIM: 607535) RING1 and YY1-binding protein (228 aa)
initn: 809 init1: 499 opt: 528 Z-score: 476.6 bits: 95.1 E(85289): 8.3e-20
Smith-Waterman score: 689; 57.1% identity (72.2% similar) in 212 aa overlap (1-166:3-214)
10 20 30 40 50
pF1KB7 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQ
::::::::::::: ::..:::.::::::::::::::::: .::::::::::::: ::
NP_036 MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 LVAQQVTQQFVPPTQSKKEKKDKVEK---EKSEKE-----TTSKKNSHKKT---------
::::::.::.. : :::::.:::: :: ::. ...:::..:::
NP_036 LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
70 80 90 100 110 120
110 120 130
pF1KB7 ------------------------RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSP
::::::::::.::.: ::::..:::::::::::.:
NP_036 PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
130 140 150 160 170 180
140 150 160 170 180
pF1KB7 PASSA-----ASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
.::. :...:..::.:.:..:..: ::::
NP_036 STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
190 200 210 220
180 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:25:47 2016 done: Sat Nov 5 16:25:48 2016
Total Scan time: 6.650 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]