Result of FASTA (ccds) for
pF1KB7917
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7917, 370 aa
1>>>pF1KB7917 370 - 370 aa - 370 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1968+/-0.000742; mu= 16.5764+/- 0.044
mean_var=60.9780+/-12.500, 0's: 0 Z-trim(108.3): 53 B-trim: 428 in 1/50
Lambda= 0.164243
statistics sampled from 10055 (10111) to 10055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.311), width: 16
Scan time: 2.780
The best scores are: opt bits E(32554)
CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 ( 370) 2600 624.5 4.7e-179
CCDS13428.1 TMEM189 gene_id:387521|Hs108|chr20 ( 270) 1664 402.6 2.1e-112
CCDS54473.1 TMEM189 gene_id:387521|Hs108|chr20 ( 267) 1629 394.3 6.5e-110
CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 147) 957 234.9 3.3e-62
CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 170) 956 234.7 4.5e-62
CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 ( 145) 892 219.5 1.4e-57
CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 716 177.8 3.9e-45
CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 103) 614 153.6 7.2e-38
CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 350 91.0 5e-19
>>CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 (370 aa)
initn: 2600 init1: 2600 opt: 2600 Z-score: 3328.1 bits: 624.5 E(32554): 4.7e-179
Smith-Waterman score: 2600; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)
10 20 30 40 50 60
pF1KB7 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 APPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP
310 320 330 340 350 360
370
pF1KB7 QPPEGQCYSN
::::::::::
CCDS13 QPPEGQCYSN
370
>>CCDS13428.1 TMEM189 gene_id:387521|Hs108|chr20 (270 aa)
initn: 1653 init1: 1653 opt: 1664 Z-score: 2131.5 bits: 402.6 E(32554): 2.1e-112
Smith-Waterman score: 1664; 93.3% identity (95.7% similar) in 255 aa overlap (1-250:1-255)
10 20 30 40 50 60
pF1KB7 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTG-VKVPRN--
::::::::::::::::::::::::::::::::::::::::::::::::::: .. : .
CCDS13 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 --FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG
.: ::.: .: :
CCDS13 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK
250 260 270
>>CCDS54473.1 TMEM189 gene_id:387521|Hs108|chr20 (267 aa)
initn: 1620 init1: 877 opt: 1629 Z-score: 2086.8 bits: 394.3 E(32554): 6.5e-110
Smith-Waterman score: 1629; 92.2% identity (94.5% similar) in 255 aa overlap (1-250:1-252)
10 20 30 40 50 60
pF1KB7 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS54 LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPI---AFIRPFREH
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
120 130 140 150 160 170
190 200 210 220 230
pF1KB7 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTG-VKVPRN--
::::::::::::::::::::::::::::::::::::::::::::::::::: .. : .
CCDS54 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 --FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG
.: ::.: .: :
CCDS54 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK
240 250 260
>>CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 (147 aa)
initn: 957 init1: 957 opt: 957 Z-score: 1230.2 bits: 234.9 E(32554): 3.3e-62
Smith-Waterman score: 957; 99.3% identity (100.0% similar) in 141 aa overlap (230-370:7-147)
200 210 220 230 240 250
pF1KB7 TLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDGTVSWG
.:::::::::::::::::::::::::::::
CCDS33 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWG
10 20 30
260 270 280 290 300 310
pF1KB7 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS
40 50 60 70 80 90
320 330 340 350 360 370
pF1KB7 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
100 110 120 130 140
>>CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 (170 aa)
initn: 955 init1: 955 opt: 956 Z-score: 1228.0 bits: 234.7 E(32554): 4.5e-62
Smith-Waterman score: 956; 96.6% identity (97.3% similar) in 146 aa overlap (225-370:27-170)
200 210 220 230 240 250
pF1KB7 LPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDG
. : ::::::::::::::::::::::::
CCDS13 MPGEVQASYLKSQSKLSDEGRLEPRKFHC--KGVKVPRNFRLLEELEEGQKGVGDG
10 20 30 40 50
260 270 280 290 300 310
pF1KB7 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN
60 70 80 90 100 110
320 330 340 350 360 370
pF1KB7 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
120 130 140 150 160 170
>>CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 (145 aa)
initn: 906 init1: 886 opt: 892 Z-score: 1147.1 bits: 219.5 E(32554): 1.4e-57
Smith-Waterman score: 892; 90.2% identity (96.5% similar) in 143 aa overlap (228-370:3-145)
200 210 220 230 240 250
pF1KB7 WVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDGTVS
..::::::::::::::::::::::::::::
CCDS43 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVS
10 20 30
260 270 280 290 300 310
pF1KB7 WGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN
:::::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:
CCDS43 WGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN
40 50 60 70 80 90
320 330 340 350 360 370
pF1KB7 SSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
.:.:.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS43 NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
100 110 120 130 140
>>CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 716 init1: 716 opt: 716 Z-score: 923.8 bits: 177.8 E(32554): 3.9e-45
Smith-Waterman score: 716; 100.0% identity (100.0% similar) in 105 aa overlap (266-370:1-105)
240 250 260 270 280 290
pF1KB7 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG
::::::::::::::::::::::::::::::
CCDS74 MTLTRWTGMIIGPPRTIYENRIYSLKIECG
10 20 30
300 310 320 330 340 350
pF1KB7 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
40 50 60 70 80 90
360 370
pF1KB7 NMKLPQPPEGQCYSN
:::::::::::::::
CCDS74 NMKLPQPPEGQCYSN
100
>>CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 (103 aa)
initn: 610 init1: 610 opt: 614 Z-score: 793.3 bits: 153.6 E(32554): 7.2e-38
Smith-Waterman score: 614; 87.9% identity (92.5% similar) in 107 aa overlap (264-370:3-103)
240 250 260 270 280 290
pF1KB7 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE
::..: .:. .:::::::::::::
CCDS13 MKEDLNLENFTA------KTIYENRIYSLKIE
10 20
300 310 320 330 340 350
pF1KB7 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
30 40 50 60 70 80
360 370
pF1KB7 KENMKLPQPPEGQCYSN
:::::::::::::::::
CCDS13 KENMKLPQPPEGQCYSN
90 100
>>CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 659 init1: 350 opt: 350 Z-score: 455.1 bits: 91.0 E(32554): 5e-19
Smith-Waterman score: 579; 69.5% identity (70.2% similar) in 141 aa overlap (230-370:7-105)
200 210 220 230 240 250
pF1KB7 TLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDGTVSWG
.:::::::::::::::::::::::::::::
CCDS58 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWG
10 20 30
260 270 280 290 300 310
pF1KB7 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS
:::::::::::::::::::::
CCDS58 LEDDEDMTLTRWTGMIIGPPR---------------------------------------
40 50
320 330 340 350 360 370
pF1KB7 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ---VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
60 70 80 90 100
370 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:48:41 2016 done: Sat Nov 5 19:48:41 2016
Total Scan time: 2.780 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]