Result of FASTA (omim) for
pF1KB7895
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7895, 588 aa
1>>>pF1KB7895 588 - 588 aa - 588 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5555+/-0.000402; mu= 17.9818+/- 0.025
mean_var=72.4565+/-14.267, 0's: 0 Z-trim(111.6): 24 B-trim: 31 in 1/52
Lambda= 0.150673
statistics sampled from 20272 (20289) to 20272 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.238), width: 16
Scan time: 10.310
The best scores are: opt bits E(85289)
NP_005671 (OMIM: 604904) TATA box-binding protein- ( 588) 3987 876.4 0
XP_011508712 (OMIM: 604904) PREDICTED: TATA box-bi ( 588) 3949 868.1 0
XP_011508713 (OMIM: 604904) PREDICTED: TATA box-bi ( 380) 2557 565.4 1.2e-160
NP_001305906 (OMIM: 604904) TATA box-binding prote ( 333) 2234 495.2 1.4e-139
NP_001305905 (OMIM: 604904) TATA box-binding prote ( 333) 2234 495.2 1.4e-139
>>NP_005671 (OMIM: 604904) TATA box-binding protein-asso (588 aa)
initn: 3987 init1: 3987 opt: 3987 Z-score: 4682.4 bits: 876.4 E(85289): 0
Smith-Waterman score: 3987; 99.7% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB7 MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKAVKYDVQAVA
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_005 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTATAGKKSPSSFQFNWT
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_005 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
490 500 510 520 530 540
550 560 570 580
pF1KB7 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
550 560 570 580
>>XP_011508712 (OMIM: 604904) PREDICTED: TATA box-bindin (588 aa)
initn: 3949 init1: 3949 opt: 3949 Z-score: 4637.7 bits: 868.1 E(85289): 0
Smith-Waterman score: 3949; 99.5% identity (100.0% similar) in 582 aa overlap (7-588:7-588)
10 20 30 40 50 60
pF1KB7 MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHALMEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTVEVGTFLDLPRFPDITEDC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKAVKYDVQAVA
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
XP_011 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTATAGKKSPSSFQFNWT
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
XP_011 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
490 500 510 520 530 540
550 560 570 580
pF1KB7 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
550 560 570 580
>>XP_011508713 (OMIM: 604904) PREDICTED: TATA box-bindin (380 aa)
initn: 2557 init1: 2557 opt: 2557 Z-score: 3005.2 bits: 565.4 E(85289): 1.2e-160
Smith-Waterman score: 2557; 99.2% identity (100.0% similar) in 380 aa overlap (209-588:1-380)
180 190 200 210 220 230
pF1KB7 SKASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFV
::::::::::::::::::::::::::::::
XP_011 MTMPQTLAFCYLSLLWQREAITLSDLLRFV
10 20 30
240 250 260 270 280 290
pF1KB7 EEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITE
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
XP_011 EEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTVEVGTFLDLPRFPDITE
40 50 60 70 80 90
300 310 320 330 340 350
pF1KB7 DCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKAVKYDVQA
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
XP_011 DCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQA
100 110 120 130 140 150
360 370 380 390 400 410
pF1KB7 VAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKW
160 170 180 190 200 210
420 430 440 450 460 470
pF1KB7 EEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTATAGKKSPSSFQFN
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
XP_011 EEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFN
220 230 240 250 260 270
480 490 500 510 520 530
pF1KB7 WTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLS
280 290 300 310 320 330
540 550 560 570 580
pF1KB7 YQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
340 350 360 370 380
>>NP_001305906 (OMIM: 604904) TATA box-binding protein-a (333 aa)
initn: 2234 init1: 2234 opt: 2234 Z-score: 2626.7 bits: 495.2 E(85289): 1.4e-139
Smith-Waterman score: 2234; 99.4% identity (100.0% similar) in 333 aa overlap (256-588:1-333)
230 240 250 260 270 280
pF1KB7 REAITLSDLLRFVEEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVG
::::::::::::::::::::::::::::::
NP_001 MKLYGRDRGIFGIESWPDYEDIYKKTIEVG
10 20 30
290 300 310 320 330 340
pF1KB7 TFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPI
40 50 60 70 80 90
350 360 370 380 390 400
pF1KB7 AKMAKAVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQ
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKMAKTVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQ
100 110 120 130 140 150
410 420 430 440 450 460
pF1KB7 IMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 IMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTA
160 170 180 190 200 210
470 480 490 500 510 520
pF1KB7 TAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCT
220 230 240 250 260 270
530 540 550 560 570 580
pF1KB7 HVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKV
280 290 300 310 320 330
pF1KB7 RRH
:::
NP_001 RRH
>>NP_001305905 (OMIM: 604904) TATA box-binding protein-a (333 aa)
initn: 2234 init1: 2234 opt: 2234 Z-score: 2626.7 bits: 495.2 E(85289): 1.4e-139
Smith-Waterman score: 2234; 99.4% identity (100.0% similar) in 333 aa overlap (256-588:1-333)
230 240 250 260 270 280
pF1KB7 REAITLSDLLRFVEEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVG
::::::::::::::::::::::::::::::
NP_001 MKLYGRDRGIFGIESWPDYEDIYKKTIEVG
10 20 30
290 300 310 320 330 340
pF1KB7 TFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPI
40 50 60 70 80 90
350 360 370 380 390 400
pF1KB7 AKMAKAVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQ
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKMAKTVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQ
100 110 120 130 140 150
410 420 430 440 450 460
pF1KB7 IMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 IMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTA
160 170 180 190 200 210
470 480 490 500 510 520
pF1KB7 TAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCT
220 230 240 250 260 270
530 540 550 560 570 580
pF1KB7 HVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKV
280 290 300 310 320 330
pF1KB7 RRH
:::
NP_001 RRH
588 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:24:34 2016 done: Sat Nov 5 16:24:36 2016
Total Scan time: 10.310 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]