FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7895, 588 aa
  1>>>pF1KB7895 588 - 588 aa - 588 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7801+/-0.000979; mu= 16.6363+/- 0.059
 mean_var=69.9814+/-13.977, 0's: 0 Z-trim(104.4): 27  B-trim: 11 in 1/50
 Lambda= 0.153314
 statistics sampled from 7891 (7898) to 7891 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.243), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS33143.1 TAF1B gene_id:9014|Hs108|chr2          ( 588) 3986 891.1       0


>>CCDS33143.1 TAF1B gene_id:9014|Hs108|chr2               (588 aa)
 initn: 3986 init1: 3986 opt: 3986  Z-score: 4761.9  bits: 891.1 E(32554):    0
Smith-Waterman score: 3986; 99.5% identity (100.0% similar) in 588 aa overlap (1-588:1-588)

               10        20        30        40        50        60
pF1KB7 MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS33 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTVEVGTFLDLPRFPDITEDC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKAVKYDVQAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS33 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVDSTATAGKKSPSSFQFNWT
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS33 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
              490       500       510       520       530       540

              550       560       570       580        
pF1KB7 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
              550       560       570       580        




588 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:24:33 2016 done: Sat Nov  5 16:24:34 2016
 Total Scan time:  3.420 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]