Result of FASTA (ccds) for
pF1KB7893
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7893, 588 aa
1>>>pF1KB7893 588 - 588 aa - 588 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7779+/-0.000944; mu= 7.9064+/- 0.057
mean_var=148.4518+/-29.899, 0's: 0 Z-trim(110.3): 87 B-trim: 101 in 2/49
Lambda= 0.105264
statistics sampled from 11434 (11521) to 11434 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.354), width: 16
Scan time: 3.810
The best scores are: opt bits E(32554)
CCDS8428.1 TRIM29 gene_id:23650|Hs108|chr11 ( 588) 3944 611.0 1.4e-174
CCDS81637.1 TRIM29 gene_id:23650|Hs108|chr11 ( 327) 2136 336.2 3.8e-92
CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17 ( 564) 502 88.2 3e-17
CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17 ( 630) 422 76.1 1.5e-13
CCDS32737.1 TRIM47 gene_id:91107|Hs108|chr17 ( 638) 405 73.5 9e-13
>>CCDS8428.1 TRIM29 gene_id:23650|Hs108|chr11 (588 aa)
initn: 3944 init1: 3944 opt: 3944 Z-score: 3247.9 bits: 611.0 E(32554): 1.4e-174
Smith-Waterman score: 3944; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB7 MEAADASRSNGSSPEARDARSPSGPSGSLENGTKADGKDAKTTNGHGGEAAEGKSLGSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MEAADASRSNGSSPEARDARSPSGPSGSLENGTKADGKDAKTTNGHGGEAAEGKSLGSAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KPGEGRSALFAGNEWRRPIIQFVESGDDKNSNYFSMDSMEGKRSPYAGLQLGAAKKPPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KPGEGRSALFAGNEWRRPIIQFVESGDDKNSNYFSMDSMEGKRSPYAGLQLGAAKKPPVT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAEKGELRKSIFSESRKPTVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCIGNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 FAEKGELRKSIFSESRKPTVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCIGNK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 QKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 SFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KQTREQLHSISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLLNVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KQTREQLHSISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLLNVC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 MRHVEKMCKADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTPKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MRHVEKMCKADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTPKGG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 VRTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSSSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VRTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSSSFS
490 500 510 520 530 540
550 560 570 580
pF1KB7 LKGYPSLMRSQSPKAQPQTWKSGKQTMLSHYRPFYVNKGNGIGSNEAP
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LKGYPSLMRSQSPKAQPQTWKSGKQTMLSHYRPFYVNKGNGIGSNEAP
550 560 570 580
>>CCDS81637.1 TRIM29 gene_id:23650|Hs108|chr11 (327 aa)
initn: 2136 init1: 2136 opt: 2136 Z-score: 1767.8 bits: 336.2 E(32554): 3.8e-92
Smith-Waterman score: 2136; 100.0% identity (100.0% similar) in 321 aa overlap (268-588:7-327)
240 250 260 270 280 290
pF1KB7 TDQTCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKD
::::::::::::::::::::::::::::::
CCDS81 MVPGISETELSLQKEQLQLKIIEIEDEAEKWQKEKD
10 20 30
300 310 320 330 340 350
pF1KB7 RIKSFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RIKSFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVL
40 50 60 70 80 90
360 370 380 390 400 410
pF1KB7 HEDKQTREQLHSISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HEDKQTREQLHSISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KB7 NVCMRHVEKMCKADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NVCMRHVEKMCKADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTP
160 170 180 190 200 210
480 490 500 510 520 530
pF1KB7 KGGVRTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KGGVRTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSS
220 230 240 250 260 270
540 550 560 570 580
pF1KB7 SFSLKGYPSLMRSQSPKAQPQTWKSGKQTMLSHYRPFYVNKGNGIGSNEAP
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SFSLKGYPSLMRSQSPKAQPQTWKSGKQTMLSHYRPFYVNKGNGIGSNEAP
280 290 300 310 320
>>CCDS11171.1 TRIM16 gene_id:10626|Hs108|chr17 (564 aa)
initn: 520 init1: 247 opt: 502 Z-score: 423.2 bits: 88.2 E(32554): 3e-17
Smith-Waterman score: 502; 33.3% identity (66.7% similar) in 240 aa overlap (169-406:73-309)
140 150 160 170 180 190
pF1KB7 TVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCIGNKQ--KAVKSCLVCQASFCE
.::::: :. . . :::::::.:....::
CCDS11 EDVGSSEKLGRETEEQDSDSAEQGDPAGEGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCE
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB7 LHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHS
::.:: . ...: : ::..: . : ::.: . . :: :: ::: : :::..:.
CCDS11 EHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAHHSPLSAFCCPDQQCICQDCC-QEHSGHT
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB7 TVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIKSFTTNEKAILEQNFRD
:... :. .::.::. . .:. :. :. . : .. . ... ::. :..: .
CCDS11 IVSLDAARRDKEAELQCTQLDLERKLKLNENAISRLQANQKSVLVSVSEVKAVAEMQFGE
170 180 190 200 210 220
320 330 340 350 360 370
pF1KB7 LVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHEDKQTREQLHSISDSVLF
:. ..: . .: ::..:: :..:.. : :. :. ....:: :.. .::..: :
CCDS11 LLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELERMAAISNTVQF
230 240 250 260 270 280
380 390 400 410 420 430
pF1KB7 LQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLLNVCMRHVEKMCKADLSRNF
:.:. . .. .. .:. .: :. . :
CCDS11 LEEYCKFKNTEDI--TFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQEFSKEE
290 300 310 320 330
>>CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17 (630 aa)
initn: 296 init1: 296 opt: 422 Z-score: 356.8 bits: 76.1 E(32554): 1.5e-13
Smith-Waterman score: 422; 28.8% identity (62.9% similar) in 267 aa overlap (166-426:100-357)
140 150 160 170 180 190
pF1KB7 RKPTVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCIGNKQKAVKSCLVCQASFC
: . .: :: :. :. :::.::::.::::
CCDS11 CNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCL--KEAAVKTCLVCMASFC
70 80 90 100 110 120
200 210 220 230 240 250
pF1KB7 ELHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNH
. ::.::... ::.:: : :.::. ::: :.. :.:: . :::..:. :::.
CCDS11 QEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICLV-EHKTC
130 140 150 160 170 180
260 270 280 290 300 310
pF1KB7 STVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIKS--FTTNEKA-ILEQ
: ... .:.:. :. : ...: . .:. .. . ..: .. .:.:.:. :.:
CCDS11 SPASLSQASADLEATL---RHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQLQQ
190 200 210 220 230 240
320 330 340 350 360 370
pF1KB7 NFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHEDKQTREQLHSISD
.. .. :. .. ....:. . .. .:.. : .. . .. :. :: . :
CCDS11 EYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLTKRD
250 260 270 280 290 300
380 390 400 410 420
pF1KB7 SVLFLQEFGALMSNYSLP---PPLPTYHVLLEGEGLGQSLGNFKDDLLNVCMRHVEKMCK
::.. . : . . : : . : :.. :. :: ..:..: . :. ....
CCDS11 EFEFLEKASKLRGISTKPVYIPEVELNHKLIK--GIHQSTIDLKNEL-KQCIGRLQEPTP
310 320 330 340 350 360
430 440 450 460 470 480
pF1KB7 ADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTPKGGVRTSYQPSS
CCDS11 SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
370 380 390 400 410 420
>>CCDS32737.1 TRIM47 gene_id:91107|Hs108|chr17 (638 aa)
initn: 355 init1: 294 opt: 405 Z-score: 342.8 bits: 73.5 E(32554): 9e-13
Smith-Waterman score: 405; 28.9% identity (56.4% similar) in 266 aa overlap (166-427:122-384)
140 150 160 170 180 190
pF1KB7 RKPTVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCI-GNKQKAVKSCLVCQASF
.: : : ::.: : :. ::: : :::
CCDS32 APALAPEPSAPSALPSVPEPSAPCAPEPWPAGEEPVRCDACPEGAALPAALSCLSCLASF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB7 CELHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKN
: :: :: .. :.: :.:. :.: .: :: : . .: .:.....:.: : :::..
CCDS32 CPAHLGPHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRAERVCLCEACAAQEHRG
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB7 HSTVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIKSFTTNEKAILEQNF
: : .:. .: .:.: : .. .. :. . .. ::: .. :. . . :
CCDS32 HELVPLEQERALQEAEQSKVLSAVEDRMDELGAGIAQSRRTVALIKSAAVAERERVSRLF
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB7 RDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHEDKQTREQLHSISDSV
: . :. . .: . .:. : . . . . .:. . : . .:. :. .:::
CCDS32 ADAAAALQGFQTQVLGFIEEGEAAMLGRSQGDLRRQEEQRSRLSRARQNLSQVPE-ADSV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB7 LFLQEFGAL---MSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLLNVCMRHVEKMCKAD
::::. :: . . : : : .. . . :.. .: : .:. . :..
CCDS32 SFLQELLALRLALEDGCGPGPGPPRELSFTKSS--QAVRAVRDMLAVACVNQWEQLRGPG
340 350 360 370 380
440 450 460 470 480 490
pF1KB7 LSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTPKGGVRTSYQPSSPG
CCDS32 GNEDGPQKLDSEADAEPQDLESTNLLESEAPRDYFLKFAYIVDLDSDTADKFLQLFGTKG
390 400 410 420 430 440
588 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:18:36 2016 done: Fri Nov 4 21:18:36 2016
Total Scan time: 3.810 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]