FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7885, 581 aa
  1>>>pF1KB7885 581 - 581 aa - 581 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7067+/-0.000386; mu= 18.6162+/- 0.024
 mean_var=101.5038+/-20.238, 0's: 0 Z-trim(114.6): 7  B-trim: 310 in 1/53
 Lambda= 0.127301
 statistics sampled from 24575 (24578) to 24575 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.288), width:  16
 Scan time: 11.060

The best scores are:                                      opt bits E(85289)
NP_057297 (OMIM: 604501,616866,617066) activating  ( 581) 3922 731.2 2.2e-210
NP_001308853 (OMIM: 604501,616866,617066) activati ( 351) 2365 445.1 1.8e-124


>>NP_057297 (OMIM: 604501,616866,617066) activating sign  (581 aa)
 initn: 3922 init1: 3922 opt: 3922  Z-score: 3898.0  bits: 731.2 E(85289): 2.2e-210
Smith-Waterman score: 3922; 100.0% identity (100.0% similar) in 581 aa overlap (1-581:1-581)

               10        20        30        40        50        60
pF1KB7 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
              490       500       510       520       530       540

              550       560       570       580 
pF1KB7 CKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV
       :::::::::::::::::::::::::::::::::::::::::
NP_057 CKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV
              550       560       570       580 

>>NP_001308853 (OMIM: 604501,616866,617066) activating s  (351 aa)
 initn: 2365 init1: 2365 opt: 2365  Z-score: 2355.4  bits: 445.1 E(85289): 1.8e-124
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 351 aa overlap (231-581:1-351)

              210       220       230       240       250       260
pF1KB7 LFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLE
                                     ::::::::::::::::::::::::::::::
NP_001                               MSGVENSGKVDISTKDLLPHQELRIKSGLE
                                             10        20        30

              270       280       290       300       310       320
pF1KB7 KAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHAS
               40        50        60        70        80        90

              330       340       350       360       370       380
pF1KB7 RLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGTLNQPLTKLDRSSEEPLGVLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGTLNQPLTKLDRSSEEPLGVLV
              100       110       120       130       140       150

              390       400       410       420       430       440
pF1KB7 NPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQLRIQDQEFQEGFDGGWCLSVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQLRIQDQEFQEGFDGGWCLSVH
              160       170       180       190       200       210

              450       460       470       480       490       500
pF1KB7 QPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGKDVEFPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQEVSELQATYRLLRGKDVEFPN
              220       230       240       250       260       270

              510       520       530       540       550       560
pF1KB7 DYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFICKNPQEMVVKFPIKGNPKIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFICKNPQEMVVKFPIKGNPKIW
              280       290       300       310       320       330

              570       580 
pF1KB7 KLDSKIHQGAKKGLMKQNKAV
       :::::::::::::::::::::
NP_001 KLDSKIHQGAKKGLMKQNKAV
              340       350 




581 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:15:55 2016 done: Fri Nov  4 21:15:56 2016
 Total Scan time: 11.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]