FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7885, 581 aa
  1>>>pF1KB7885 581 - 581 aa - 581 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9503+/-0.000948; mu= 16.9353+/- 0.057
 mean_var=95.1431+/-18.921, 0's: 0 Z-trim(107.6): 12  B-trim: 71 in 1/49
 Lambda= 0.131488
 statistics sampled from 9675 (9676) to 9675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.297), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS10194.1 TRIP4 gene_id:9325|Hs108|chr15         ( 581) 3922 754.5  8e-218


>>CCDS10194.1 TRIP4 gene_id:9325|Hs108|chr15              (581 aa)
 initn: 3922 init1: 3922 opt: 3922  Z-score: 4024.1  bits: 754.5 E(32554): 8e-218
Smith-Waterman score: 3922; 100.0% identity (100.0% similar) in 581 aa overlap (1-581:1-581)

               10        20        30        40        50        60
pF1KB7 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQFIEELITKWQKNDQELISDPLQQCFKKDEILDGQKSGDHLKRGRKKGRNRQEVPAFTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PDTTAEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 INNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LERETLQKREEELRELRHASRLSKKVTIDFAGRKILEEENSLAEYHSRLDETIQAIANGT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LNQPLTKLDRSSEEPLGVLVNPNMYQSPPQWVDHTGAASQKKAFRSSGFGLEFNSFQHQL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RIQDQEFQEGFDGGWCLSVHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKKPSPQE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSELQATYRLLRGKDVEFPNDYPSGCLLGCVDLIDCLSQKQFKEQFPDISQESDSPFVFI
              490       500       510       520       530       540

              550       560       570       580 
pF1KB7 CKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV
       :::::::::::::::::::::::::::::::::::::::::
CCDS10 CKNPQEMVVKFPIKGNPKIWKLDSKIHQGAKKGLMKQNKAV
              550       560       570       580 




581 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:15:54 2016 done: Fri Nov  4 21:15:54 2016
 Total Scan time:  3.610 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]