Result of FASTA (ccds) for
pF1KB7807
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7807, 525 aa
1>>>pF1KB7807 525 - 525 aa - 525 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2694+/-0.00082; mu= 2.3869+/- 0.050
mean_var=229.2884+/-46.498, 0's: 0 Z-trim(116.2): 11 B-trim: 0 in 0/53
Lambda= 0.084700
statistics sampled from 16771 (16779) to 16771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.515), width: 16
Scan time: 3.640
The best scores are: opt bits E(32554)
CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12 ( 525) 3546 445.8 5.7e-125
CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12 ( 461) 2865 362.5 5.8e-100
CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2 ( 486) 617 87.8 3e-17
CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2 ( 487) 617 87.8 3e-17
>>CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12 (525 aa)
initn: 3546 init1: 3546 opt: 3546 Z-score: 2357.0 bits: 445.8 E(32554): 5.7e-125
Smith-Waterman score: 3546; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)
10 20 30 40 50 60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
430 440 450 460 470 480
490 500 510 520
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
:::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
490 500 510 520
>>CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12 (461 aa)
initn: 2849 init1: 2849 opt: 2865 Z-score: 1908.1 bits: 362.5 E(32554): 5.8e-100
Smith-Waterman score: 2956; 87.8% identity (87.8% similar) in 525 aa overlap (1-525:1-461)
10 20 30 40 50 60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
:::::
CCDS81 DGHLQ-------------------------------------------------------
490 500 510 520
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
::::::::::::::::::::::::::::::::::::
CCDS81 ---------EFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
430 440 450 460
>>CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2 (486 aa)
initn: 1089 init1: 576 opt: 617 Z-score: 423.2 bits: 87.8 E(32554): 3e-17
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)
10 20 30 40 50 60
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
: :::::::::::::.::.::::::...::
CCDS82 MAAALPRTLGELQLYRILQKANLLSYFDAFI
10 20 30
70 80 90 100 110 120
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS82 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
::::..:. : . : : ... :....:: : : ::. : .
CCDS82 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
100 110 120 130 140
180 190 200 210 220 230
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
:. ..:. :.: :. . ::. . . . ::: :: :.. : ::. .
CCDS82 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
150 160 170 180 190
240 250 260 270 280 290
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
:.: :::. ..:..: .:: ::: :::::. .::::::.:.: .:
CCDS82 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
200 210 220 230 240
300 310 320 330 340 350
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
:::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS82 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
:: :: . . .. . : :..: : : :..:
CCDS82 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
310 320 330 340 350 360
420 430 440 450 460 470
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
CCDS82 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
370 380 390 400 410 420
>>CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2 (487 aa)
initn: 1095 init1: 576 opt: 617 Z-score: 423.2 bits: 87.8 E(32554): 3e-17
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)
10 20 30 40 50 60
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
: :::::::::::::.::.::::::...::
CCDS23 MAAALPRTLGELQLYRILQKANLLSYFDAFI
10 20 30
70 80 90 100 110 120
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS23 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
::::..:. : . : : ... :....:: : : ::. : .
CCDS23 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
100 110 120 130 140
180 190 200 210 220 230
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
:. ..:. :.: :. . ::. . . . ::: :: :.. : ::. .
CCDS23 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
150 160 170 180 190
240 250 260 270 280 290
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
:.: :::. ..:..: .:: ::: :::::. .::::::.:.: .:
CCDS23 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
200 210 220 230 240
300 310 320 330 340 350
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
:::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS23 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
250 260 270 280 290 300
360 370 380 390 400 410
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
:: :: . . .. . : :..: : : :..:
CCDS23 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
310 320 330 340 350 360
420 430 440 450 460 470
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
CCDS23 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
370 380 390 400 410 420
525 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:24:27 2016 done: Fri Nov 4 22:24:28 2016
Total Scan time: 3.640 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]