Result of FASTA (omim) for
pF1KB7803
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7803, 503 aa
1>>>pF1KB7803 503 - 503 aa - 503 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9856+/-0.0004; mu= 16.0883+/- 0.025
mean_var=96.1045+/-19.452, 0's: 0 Z-trim(113.4): 50 B-trim: 0 in 0/53
Lambda= 0.130829
statistics sampled from 22668 (22717) to 22668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.266), width: 16
Scan time: 9.890
The best scores are: opt bits E(85289)
NP_001035199 (OMIM: 600879) nuclear respiratory fa ( 503) 3199 614.4 2.4e-175
NP_005002 (OMIM: 600879) nuclear respiratory facto ( 503) 3199 614.4 2.4e-175
NP_001280092 (OMIM: 600879) nuclear respiratory fa ( 522) 2898 557.6 3.1e-158
NP_001280093 (OMIM: 600879) nuclear respiratory fa ( 342) 2171 420.3 4.5e-117
>>NP_001035199 (OMIM: 600879) nuclear respiratory factor (503 aa)
initn: 3199 init1: 3199 opt: 3199 Z-score: 3269.1 bits: 614.4 E(85289): 2.4e-175
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)
10 20 30 40 50 60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
430 440 450 460 470 480
490 500
pF1KB7 TTRISDSAVTMDGQAVEVVTLEQ
:::::::::::::::::::::::
NP_001 TTRISDSAVTMDGQAVEVVTLEQ
490 500
>>NP_005002 (OMIM: 600879) nuclear respiratory factor 1 (503 aa)
initn: 3199 init1: 3199 opt: 3199 Z-score: 3269.1 bits: 614.4 E(85289): 2.4e-175
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)
10 20 30 40 50 60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
430 440 450 460 470 480
490 500
pF1KB7 TTRISDSAVTMDGQAVEVVTLEQ
:::::::::::::::::::::::
NP_005 TTRISDSAVTMDGQAVEVVTLEQ
490 500
>>NP_001280092 (OMIM: 600879) nuclear respiratory factor (522 aa)
initn: 2898 init1: 2898 opt: 2898 Z-score: 2961.8 bits: 557.6 E(85289): 3.1e-158
Smith-Waterman score: 3151; 96.4% identity (96.4% similar) in 522 aa overlap (1-503:1-522)
10 20 30 40 50 60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
370 380 390 400 410 420
430 440 450 460
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGL-------------------VQIPVSMYQT
::::::::::::::::::::::::::::::: ::::::::::
NP_001 ATLQGGGQIVLSGETAAAVGALTGVQDANGLFMADRAGRKWILTDKATGLVQIPVSMYQT
430 440 450 460 470 480
470 480 490 500
pF1KB7 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
::::::::::::::::::::::::::::::::::::::::::
NP_001 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
490 500 510 520
>>NP_001280093 (OMIM: 600879) nuclear respiratory factor (342 aa)
initn: 2171 init1: 2171 opt: 2171 Z-score: 2222.8 bits: 420.3 E(85289): 4.5e-117
Smith-Waterman score: 2171; 100.0% identity (100.0% similar) in 342 aa overlap (162-503:1-342)
140 150 160 170 180 190
pF1KB7 VLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTID
::::::::::::::::::::::::::::::
NP_001 MILEDLESALAEHAPAPQEVNSELPPLTID
10 20 30
200 210 220 230 240 250
pF1KB7 GIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEE
40 50 60 70 80 90
260 270 280 290 300 310
pF1KB7 QKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQTVVQTFS
100 110 120 130 140 150
320 330 340 350 360 370
pF1KB7 NPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQ
160 170 180 190 200 210
380 390 400 410 420 430
pF1KB7 TTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVL
220 230 240 250 260 270
440 450 460 470 480 490
pF1KB7 SGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPVTTRISDSAVTM
280 290 300 310 320 330
500
pF1KB7 DGQAVEVVTLEQ
::::::::::::
NP_001 DGQAVEVVTLEQ
340
503 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:22:59 2016 done: Fri Nov 4 22:23:01 2016
Total Scan time: 9.890 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]