FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7803, 503 aa
  1>>>pF1KB7803 503 - 503 aa - 503 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2348+/-0.000964; mu= 14.0969+/- 0.058
 mean_var=85.2117+/-17.353, 0's: 0 Z-trim(106.0): 23  B-trim: 439 in 1/50
 Lambda= 0.138939
 statistics sampled from 8731 (8743) to 8731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.269), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS5813.2 NRF1 gene_id:4899|Hs108|chr7            ( 503) 3199 651.3 7.1e-187
CCDS78273.1 NRF1 gene_id:4899|Hs108|chr7           ( 522) 2898 591.0 1.1e-168


>>CCDS5813.2 NRF1 gene_id:4899|Hs108|chr7                 (503 aa)
 initn: 3199 init1: 3199 opt: 3199  Z-score: 3468.5  bits: 651.3 E(32554): 7.1e-187
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)

               10        20        30        40        50        60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ATLQGGGQIVLSGETAAAVGALTGVQDANGLVQIPVSMYQTVVTSLAQGNGPVQVAMAPV
              430       440       450       460       470       480

              490       500   
pF1KB7 TTRISDSAVTMDGQAVEVVTLEQ
       :::::::::::::::::::::::
CCDS58 TTRISDSAVTMDGQAVEVVTLEQ
              490       500   

>>CCDS78273.1 NRF1 gene_id:4899|Hs108|chr7                (522 aa)
 initn: 2898 init1: 2898 opt: 2898  Z-score: 3142.1  bits: 591.0 E(32554): 1.1e-168
Smith-Waterman score: 3151; 96.4% identity (96.4% similar) in 522 aa overlap (1-503:1-522)

               10        20        30        40        50        60
pF1KB7 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 STAADEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VNSELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAE
              370       380       390       400       410       420

              430       440       450                          460 
pF1KB7 ATLQGGGQIVLSGETAAAVGALTGVQDANGL-------------------VQIPVSMYQT
       :::::::::::::::::::::::::::::::                   ::::::::::
CCDS78 ATLQGGGQIVLSGETAAAVGALTGVQDANGLFMADRAGRKWILTDKATGLVQIPVSMYQT
              430       440       450       460       470       480

             470       480       490       500   
pF1KB7 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
       ::::::::::::::::::::::::::::::::::::::::::
CCDS78 VVTSLAQGNGPVQVAMAPVTTRISDSAVTMDGQAVEVVTLEQ
              490       500       510       520  




503 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:22:58 2016 done: Fri Nov  4 22:22:59 2016
 Total Scan time:  3.320 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]