Result of FASTA (ccds) for
pF1KB7763
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7763, 448 aa
1>>>pF1KB7763 448 - 448 aa - 448 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2680+/-0.00143; mu= -0.7438+/- 0.085
mean_var=227.7514+/-46.466, 0's: 0 Z-trim(106.9): 192 B-trim: 253 in 1/50
Lambda= 0.084985
statistics sampled from 9023 (9228) to 9023 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.283), width: 16
Scan time: 3.250
The best scores are: opt bits E(32554)
CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1 ( 448) 2812 358.2 9.7e-99
CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15 ( 395) 1646 215.2 9.6e-56
CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15 ( 360) 1449 191.0 1.7e-48
CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1 ( 410) 1338 177.4 2.3e-44
CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15 ( 383) 985 134.1 2.3e-31
CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15 ( 348) 955 130.4 2.8e-30
>>CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1 (448 aa)
initn: 2812 init1: 2812 opt: 2812 Z-score: 1886.1 bits: 358.2 E(32554): 9.7e-99
Smith-Waterman score: 2812; 100.0% identity (100.0% similar) in 448 aa overlap (1-448:1-448)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AAPFIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 AAPFIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLSN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SHRATANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPFIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SHRATANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPFIV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 TVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQQQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTEGE
370 380 390 400 410 420
430 440
pF1KB7 LEERETKVTGSAGTTEPHTRVSMATVSS
::::::::::::::::::::::::::::
CCDS98 LEERETKVTGSAGTTEPHTRVSMATVSS
430 440
>>CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15 (395 aa)
initn: 1501 init1: 1072 opt: 1646 Z-score: 1114.3 bits: 215.2 E(32554): 9.6e-56
Smith-Waterman score: 1646; 68.5% identity (86.2% similar) in 400 aa overlap (1-398:1-391)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS32 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS32 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS32 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
130 140 150 160 170
190 200 210 220 230
pF1KB7 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
:.: ::. : ::::..:.:: :.. .. . .:.:::.::.::::::::::::::.:::
CCDS32 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
:: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS32 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
:::. :::::::::: .::::::.:: : .:. : : :: : : .::: ::
CCDS32 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB7 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
.::.::::.::.::.:::::::::: :: ::::..: : :
CCDS32 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
360 370 380 390
420 430 440
pF1KB7 GELEERETKVTGSAGTTEPHTRVSMATVSS
>>CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15 (360 aa)
initn: 1619 init1: 1072 opt: 1449 Z-score: 984.3 bits: 191.0 E(32554): 1.7e-48
Smith-Waterman score: 1449; 67.7% identity (85.5% similar) in 359 aa overlap (1-357:1-350)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS45 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS45 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS45 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
130 140 150 160 170
190 200 210 220 230
pF1KB7 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
:.: ::. : ::::..:.:: :.. .. . .:.:::.::.::::::::::::::.:::
CCDS45 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
:: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS45 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
:::. :::::::::: .::::::.:: : .:. : : :: : : . : ::
CCDS45 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEVRSLLP
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB7 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
CCDS45 GVLCRSHPK
360
>>CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1 (410 aa)
initn: 1522 init1: 1325 opt: 1338 Z-score: 910.0 bits: 177.4 E(32554): 2.3e-44
Smith-Waterman score: 2498; 91.5% identity (91.5% similar) in 448 aa overlap (1-448:1-410)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AAPFIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLSN
:::::::::::::::::::::::::::
CCDS81 AAPFIFTSGEVVNLASLISSTNTKTTS---------------------------------
190 200
250 260 270 280 290 300
pF1KB7 SHRATANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPFIV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 -----ANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPFIV
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB7 TVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQQQ
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB7 LQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTEGE
330 340 350 360 370 380
430 440
pF1KB7 LEERETKVTGSAGTTEPHTRVSMATVSS
::::::::::::::::::::::::::::
CCDS81 LEERETKVTGSAGTTEPHTRVSMATVSS
390 400 410
>>CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15 (383 aa)
initn: 1471 init1: 914 opt: 985 Z-score: 676.5 bits: 134.1 E(32554): 2.3e-31
Smith-Waterman score: 1586; 67.5% identity (83.8% similar) in 400 aa overlap (1-398:1-379)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
130 140 150 160 170
190 200 210 220 230
pF1KB7 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
:.: ::. : :::: . . .:.:::.::.::::::::::::::.:::
CCDS10 ATPQFIIGPGGVVNL------------TDETGVSAVQFGNSSTSVLATLAALAEASAPLS
180 190 200 210 220
240 250 260 270 280 290
pF1KB7 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
:: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS10 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
:::. :::::::::: .::::::.:: : .:. : : :: : : .::: ::
CCDS10 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
290 300 310 320 330
360 370 380 390 400 410
pF1KB7 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
.::.::::.::.::.:::::::::: :: ::::..: : :
CCDS10 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
340 350 360 370 380
420 430 440
pF1KB7 GELEERETKVTGSAGTTEPHTRVSMATVSS
>>CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15 (348 aa)
initn: 1411 init1: 914 opt: 955 Z-score: 657.2 bits: 130.4 E(32554): 2.8e-30
Smith-Waterman score: 1389; 66.6% identity (82.7% similar) in 359 aa overlap (1-357:1-338)
10 20 30 40 50 60
pF1KB7 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
130 140 150 160 170
190 200 210 220 230
pF1KB7 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
:.: ::. : :::: . . .:.:::.::.::::::::::::::.:::
CCDS10 ATPQFIIGPGGVVNL------------TDETGVSAVQFGNSSTSVLATLAALAEASAPLS
180 190 200 210 220
240 250 260 270 280 290
pF1KB7 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
:: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS10 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB7 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
:::. :::::::::: .::::::.:: : .:. : : :: : : . : ::
CCDS10 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEVRSLLP
290 300 310 320 330
360 370 380 390 400 410
pF1KB7 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
CCDS10 GVLCRSHPK
340
448 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:12:13 2016 done: Fri Nov 4 22:12:13 2016
Total Scan time: 3.250 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]