Result of FASTA (ccds) for
pF1KB7750
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7750, 468 aa
1>>>pF1KB7750 468 - 468 aa - 468 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3013+/-0.000828; mu= 4.7330+/- 0.050
mean_var=159.1909+/-32.498, 0's: 0 Z-trim(113.6): 76 B-trim: 479 in 1/51
Lambda= 0.101652
statistics sampled from 14118 (14195) to 14118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.436), width: 16
Scan time: 3.710
The best scores are: opt bits E(32554)
CCDS32138.1 FOXN3 gene_id:1112|Hs108|chr14 ( 468) 3209 482.2 5e-136
CCDS41977.1 FOXN3 gene_id:1112|Hs108|chr14 ( 490) 1797 275.1 1.1e-73
CCDS1838.1 FOXN2 gene_id:3344|Hs108|chr2 ( 431) 740 120.1 4.6e-27
CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 ( 648) 377 67.0 6.9e-11
CCDS32739.1 FOXJ1 gene_id:2302|Hs108|chr17 ( 421) 372 66.1 8e-11
>>CCDS32138.1 FOXN3 gene_id:1112|Hs108|chr14 (468 aa)
initn: 3209 init1: 3209 opt: 3209 Z-score: 2555.6 bits: 482.2 E(32554): 5e-136
Smith-Waterman score: 3209; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)
10 20 30 40 50 60
pF1KB7 MGPVMPPSKKPESSGISVSSGLSQCYGGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGPVMPPSKKPESSGISVSSGLSQCYGGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KRNGALLQVPPGVIQNGARVLSRGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESEPSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KRNGALLQVPPGVIQNGARVLSRGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESEPSC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GSPVVSGDPKEDHNYSSAKSSNARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSPVVSGDPKEDHNYSSAKSSNARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGSEG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 SFRSHESPSDTEEDDRKHSQKEPKDSLGDSGYASQHKKRQHFAKARKVPSDTLPLKKRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SFRSHESPSDTEEDDRKHSQKEPKDSLGDSGYASQHKKRQHFAKARKVPSDTLPLKKRRT
370 380 390 400 410 420
430 440 450 460
pF1KB7 EKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKGQKEQKETTKN
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKGQKEQKETTKN
430 440 450 460
>>CCDS41977.1 FOXN3 gene_id:1112|Hs108|chr14 (490 aa)
initn: 1808 init1: 1763 opt: 1797 Z-score: 1436.2 bits: 275.1 E(32554): 1.1e-73
Smith-Waterman score: 3149; 95.3% identity (95.3% similar) in 490 aa overlap (1-468:1-490)
10 20 30 40 50 60
pF1KB7 MGPVMPPSKKPESSGISVSSGLSQCYGGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGPVMPPSKKPESSGISVSSGLSQCYGGSGFSKALQEDDDLDFSLPDIRLEEGAMEDEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFF
190 200 210 220 230 240
250 260 270
pF1KB7 KRNGALLQ----------------------VPPGVIQNGARVLSRGLFPGVRPLPITPIG
:::::::: :::::::::::::::::::::::::::::
CCDS41 KRNGALLQDPDIDAASAMMLLNTPPEIQAGFPPGVIQNGARVLSRGLFPGVRPLPITPIG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB7 VTAAMRNGITSCRMRTESEPSCGSPVVSGDPKEDHNYSSAKSSNARSTSPTSDSISSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VTAAMRNGITSCRMRTESEPSCGSPVVSGDPKEDHNYSSAKSSNARSTSPTSDSISSSSS
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB7 SADDHYEFATKGSQEGSEGSEGSFRSHESPSDTEEDDRKHSQKEPKDSLGDSGYASQHKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SADDHYEFATKGSQEGSEGSEGSFRSHESPSDTEEDDRKHSQKEPKDSLGDSGYASQHKK
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB7 RQHFAKARKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RQHFAKARKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKG
430 440 450 460 470 480
460
pF1KB7 QKEQKETTKN
::::::::::
CCDS41 QKEQKETTKN
490
>>CCDS1838.1 FOXN2 gene_id:3344|Hs108|chr2 (431 aa)
initn: 926 init1: 571 opt: 740 Z-score: 599.3 bits: 120.1 E(32554): 4.6e-27
Smith-Waterman score: 1027; 44.0% identity (63.3% similar) in 482 aa overlap (1-467:1-431)
10 20 30 40 50
pF1KB7 MGPV--MPPSKKPESSGISVSSGLSQCYGGSGFSKALQEDDDLDFSLPDIRLEEGAMEDE
:::: : :.:. :. : .:::: : ... .:. : . : : .. :.
CCDS18 MGPVIGMTPDKRAETPGAEKIAGLSQIYKMGSLPEAV------DAARPKATLVDSESADD
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 ELTNLNWLHESKNLLKSF--GESVLRSVSPVQDLDDDTPPS--PAHSDMPYDARQNPNCK
::::::::::: ::: .: : : :::. :.. : :: :: . : ... . :
CCDS18 ELTNLNWLHESTNLLTNFSLGSEGLPIVSPLYDIEGDDVPSFGPACYQNP--EKKSATSK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 PPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKK
:::::: ::.:::: ::.: ::::.::.:::.::::::.:::::::::::::::::::.:
CCDS18 PPYSFSLLIYMAIEHSPNKCLPVKEIYSWILDHFPYFATAPTGWKNSVRHNLSLNKCFQK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 VDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIW
:.. ... :::::::.::::. :::::::: : :.. . :. : : .
CCDS18 VERSHGKVNGKGSLWCVDPEYKPNLIQALKKQP-------FSSASS-----QNGSLSPHY
180 190 200 210 220
240 250 260 270 280
pF1KB7 PGSTFFKRNGALLQVPPGVIQNGARVL-----SRGLFPGVRPLPI-TPIGVTAAMRNGI-
:. .:.: . . .: .: .:.. .:::. : . .. :..
CCDS18 L-SSVIKQNQVRNLKESDIDAAAAMMLLNTSIEQGILECEKPLPLKTALQKKRSYGNAFH
230 240 250 260 270
290 300 310 320 330 340
pF1KB7 --TSCRMRTESEPSCGSPVVSGDPKEDHNYSSAKSSNARSTSPTSDSISSSSSSADDHYE
.. :.. ::. : ..: :::::::::... . : .: .: :: ::.:. ::
CCDS18 HPSAVRLQ-ESD----SLATSIDPKEDHNYSASSMAAQRCASRSS---VSSLSSVDEVYE
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB7 FATKGSQEGSEGSEGSFRSHESPSDTEEDDRKHSQKEPKDSLGDSGYASQHKKRQHFAKA
: :.:. ::.:::: :.:.:. .:.. .: : :::::::::
CCDS18 FIPKNSHVGSDGSEG-FHSEED-TDVDYED---------DPLGDSGYASQ--------PC
340 350 360 370
410 420 430 440 450 460
pF1KB7 RKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLLHLAGIRSCLNNITNRTAKGQKEQKET
:. :: : . : : ::.::::::::::::::.::... . ::: :. ::.
CCDS18 AKISEKGQSGKKMRKQTCQEID-EELKEAAGSLLHLAGIRTCLGSLIS-TAKTQN-QKQR
380 390 400 410 420
pF1KB7 TKN
:
CCDS18 KK
430
>>CCDS11232.1 FOXN1 gene_id:8456|Hs108|chr17 (648 aa)
initn: 394 init1: 366 opt: 377 Z-score: 308.9 bits: 67.0 E(32554): 6.9e-11
Smith-Waterman score: 377; 38.7% identity (60.3% similar) in 199 aa overlap (106-300:263-450)
80 90 100 110 120 130
pF1KB7 FGESVLRSVSPVQDLDDDTPPSPAHSDMPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRL
:..: :: ::.: :::::...: : :
CCDS11 QYSPGGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSL
240 250 260 270 280 290
140 150 160 170 180 190
pF1KB7 PVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEY
::..:::.. :::::: .:: ::::::::::::::::.::... ..: :: :: ..:
CCDS11 PVSEIYNFMTEHFPYFKTAPDGWKNSVRHNLSLNKCFEKVENKSGSSSRKGCLWALNPAK
300 310 320 330 340 350
200 210 220 230 240 250
pF1KB7 RQNLIQALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQVPP-GVI
... . :.: . : . . :. .: : . : .. :: :: :.
CCDS11 IDKMQEELQKWK-RKDPIAVRKSMAKPEELDSLIG------DKREKLGSPLLGCPPPGLS
360 370 380 390 400
260 270 280 290 300 310
pF1KB7 QNGA-RVLS--RGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESEPSCGSPVVSGDPKE
.: : :. :: : .. : .: . . .: . . : :::
CCDS11 GSGPIRPLAPPAGLSPPLHSLHPAPGPIPG--KNPLQDLLMG--HTPSCYGQTYLHLSPG
410 420 430 440 450 460
320 330 340 350 360 370
pF1KB7 DHNYSSAKSSNARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGSEGSFRSHESPSDT
CCDS11 LAPPGPPQPLFPQPDGHLELRAQPGTPQDSPLPAHTPPSHSAKLLAEPSPARTMHDTLLP
470 480 490 500 510 520
>>CCDS32739.1 FOXJ1 gene_id:2302|Hs108|chr17 (421 aa)
initn: 419 init1: 270 opt: 372 Z-score: 307.8 bits: 66.1 E(32554): 8e-11
Smith-Waterman score: 372; 42.4% identity (65.3% similar) in 144 aa overlap (95-231:101-240)
70 80 90 100 110 120
pF1KB7 WLHESKNLLKSFGESVLRSVSPVQDLDDDTPP---SPAHSDMPYDARQNPNCKPPYSFSC
:: .: .:. : . ::. :::::..
CCDS32 PGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYAT--NPHVKPPYSYAT
80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHNLSLNKCFKKVDKERSQ
:: ::.. : . .. .. ::.:: ..: :: .: :.::.:::::::::: :: .:...
CCDS32 LICMAMQASKATKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDE
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 SIGKGSLWCIDPEYRQNLIQ-ALKKT---PYHPHPHVFNTPPTCPQAYQSTSGPPIWPGS
:::..: :::.: . :.. :.:: : : :: :.: .::
CCDS32 P-GKGGFWRIDPQYAERLLSGAFKKRRLPPVHIHPAFARQAAQEPSAVPR-AGPLTVNTE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 TFFKRNGALLQVPPGVIQNGARVLSRGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESE
CCDS32 AQQLLREFEEATGEAGWGAGEGRLGHKRKQPLPKRVAKVPRPPSTLLPTPEEQGELEPLK
250 260 270 280 290 300
468 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:57:35 2016 done: Sat Nov 5 18:57:36 2016
Total Scan time: 3.710 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]