FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7744, 487 aa
  1>>>pF1KB7744 487 - 487 aa - 487 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1998+/-0.000925; mu= -1.0013+/- 0.055
 mean_var=439.1975+/-96.441, 0's: 0 Z-trim(117.6): 535  B-trim: 0 in 0/54
 Lambda= 0.061199
 statistics sampled from 17704 (18404) to 17704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.565), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS12471.1 ZBTB32 gene_id:27033|Hs108|chr19       ( 487) 3450 318.6 9.3e-87


>>CCDS12471.1 ZBTB32 gene_id:27033|Hs108|chr19            (487 aa)
 initn: 3450 init1: 3450 opt: 3450  Z-score: 1671.0  bits: 318.6 E(32554): 9.3e-87
Smith-Waterman score: 3450; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)

               10        20        30        40        50        60
pF1KB7 MSLPPIRLPSPYGSDRLVQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSLPPIRLPSPYGSDRLVQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGDRAKKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGDRAKKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DPGLKKHQEEPEKPSRNPERELGDPGEKQKPEQVSRTGGREQEMLHKHSPPRGRPEMAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DPGLKKHQEEPEKPSRNPERELGDPGEKQKPEQVSRTGGREQEMLHKHSPPRGRPEMAGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TQEAQQEQTRSKEKRLQAPVGQRGADGKHGVLTWLRENPGGSEESLRKLPGPLPPAGSLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TQEAQQEQTRSKEKRLQAPVGQRGADGKHGVLTWLRENPGGSEESLRKLPGPLPPAGSLQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 TSVTPRPSWAEAPWLVGGQPALWSILLMPPRYGIPFYHSTPTTGAWQEVWREQRIPLSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TSVTPRPSWAEAPWLVGGQPALWSILLMPPRYGIPFYHSTPTTGAWQEVWREQRIPLSLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 APKGLWSQNQLASSSPTPGSLPQGPAQLSPGEMEESDQGHTGALATCAGHEDKAGCPPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APKGLWSQNQLASSSPTPGSLPQGPAQLSPGEMEESDQGHTGALATCAGHEDKAGCPPRP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 HPPPAPPARSRPYACSVCGKRFSLKHQMETHYRVHTGEKPFSCSLCPQRSRDFSAMTKHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HPPPAPPARSRPYACSVCGKRFSLKHQMETHYRVHTGEKPFSCSLCPQRSRDFSAMTKHL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 RTHGAAPYRCSLCGAGCPSLASMQAHMRGHSPSQLPPGWTIRSTFLYSSSRPSRPSTSPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTHGAAPYRCSLCGAGCPSLASMQAHMRGHSPSQLPPGWTIRSTFLYSSSRPSRPSTSPC
              430       440       450       460       470       480

              
pF1KB7 CPSSSTT
       :::::::
CCDS12 CPSSSTT
              




487 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:21:05 2016 done: Fri Nov  4 09:21:06 2016
 Total Scan time:  4.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]