Result of FASTA (omim) for
pF1KB7731
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7731, 432 aa
1>>>pF1KB7731 432 - 432 aa - 432 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2569+/-0.000416; mu= -5.0691+/- 0.026
mean_var=488.9886+/-100.345, 0's: 0 Z-trim(125.4): 147 B-trim: 969 in 1/61
Lambda= 0.058000
statistics sampled from 48926 (49093) to 48926 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.576), width: 16
Scan time: 11.750
The best scores are: opt bits E(85289)
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 3042 268.4 2.6e-71
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 3042 268.4 2.6e-71
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 1031 100.1 1.2e-20
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 1031 100.1 1.2e-20
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 1031 100.1 1.2e-20
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 1031 100.1 1.2e-20
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 1031 100.1 1.2e-20
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 1031 100.1 1.2e-20
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 1029 99.9 1.3e-20
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 995 96.9 7.3e-20
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 995 97.0 8.3e-20
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 995 97.0 8.3e-20
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 995 97.2 1e-19
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 995 97.3 1.1e-19
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 883 87.7 6.3e-17
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 883 87.7 6.3e-17
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 883 87.7 6.3e-17
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 883 87.7 6.3e-17
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 883 87.7 6.3e-17
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 883 87.7 6.3e-17
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 883 87.7 6.3e-17
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 404 47.4 5e-05
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 401 47.3 7.8e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 395 46.7 0.0001
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 393 46.5 0.0001
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 386 46.0 0.00018
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 371 44.6 0.00035
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 360 43.8 0.00076
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 357 43.5 0.00084
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 353 43.2 0.0012
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 351 43.0 0.0012
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 349 42.9 0.0014
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 345 42.4 0.0015
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 338 41.8 0.0022
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 338 41.8 0.0022
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 338 41.8 0.0022
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 334 41.6 0.0034
>>XP_011509367 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_011 GRLPEAPKLTHL
430
>>XP_005246566 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_005 GRLPEAPKLTHL
430
>>XP_005246570 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_005 GRLPEAPKLTHL
430
>>XP_011509368 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_011 GRLPEAPKLTHL
430
>>XP_005246567 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_005 GRLPEAPKLTHL
430
>>XP_005246568 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_005 GRLPEAPKLTHL
430
>>NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [Homo (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
NP_008 GRLPEAPKLTHL
430
>>XP_006712540 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1401.4 bits: 268.4 E(85289): 2.6e-71
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
XP_006 GRLPEAPKLTHL
430
>>NP_002137 (OMIM: 142966) homeobox protein Hox-B3 isofo (431 aa)
initn: 1322 init1: 465 opt: 1031 Z-score: 492.0 bits: 100.1 E(85289): 1.2e-20
Smith-Waterman score: 1367; 50.7% identity (68.7% similar) in 454 aa overlap (17-432:1-431)
10 20 30 40 50
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPG--LFGGYGYSKTTDTYGYSTPHQPYPPPAAASS
::::.::.: . :::::. .. .:...: : :: ::.
NP_002 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVP--PQPPFQAATH
10 20 30 40
60 70 80 90 100 110
pF1KB7 LDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQ
:. :: ::::.:: . :: :. :::::::::: . : :.. ::
NP_002 LEGDYQRSACSLQSLGNA-APHAKSKELNGSCMRPGLA----------PEPLSA---PPG
50 60 70 80
120 130 140 150 160 170
pF1KB7 PPPPP--PTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS
::: :: :. .: :: . :: ::...: :..::::::::::::.:: ::.
NP_002 SPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNN
90 100 110 120 130 140
180 190 200 210
pF1KB7 CATAGESCE------------------------DKSPPGPA-SKRVRTAYTSAQLVELEK
..:.: :::::: : :::.::::::::::::::
NP_002 SPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEK
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB7 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP
::::::::::::::::::::::.:::::::::::::::::::::::. : .. :: ::
NP_002 EFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSP
210 220 230 240 250 260
280 290 300 310 320
pF1KB7 P--LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQKR
: . ..:: . .. : .:..::::::.:.. : :.: . : ::..: ::
NP_002 PQPMQSTAGFMNALHSMTP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKY
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB7 --YAAPEFEPHPMASNGGGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSS
:::.::: . .:::.... ..:::::::::. ... . : .:: ...:.:::: :
NP_002 PPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPS
330 340 350 360 370 380
390 400 410 420 430
pF1KB7 ASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSS--QGRLPEAPKLTHL
...::. : . ..:::::.:::::::::.::. :::. ::::::::
NP_002 GNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
390 400 410 420 430
>>XP_011523021 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 1322 init1: 465 opt: 1031 Z-score: 492.0 bits: 100.1 E(85289): 1.2e-20
Smith-Waterman score: 1367; 50.7% identity (68.7% similar) in 454 aa overlap (17-432:1-431)
10 20 30 40 50
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPG--LFGGYGYSKTTDTYGYSTPHQPYPPPAAASS
::::.::.: . :::::. .. .:...: : :: ::.
XP_011 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVP--PQPPFQAATH
10 20 30 40
60 70 80 90 100 110
pF1KB7 LDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQ
:. :: ::::.:: . :: :. :::::::::: . : :.. ::
XP_011 LEGDYQRSACSLQSLGNA-APHAKSKELNGSCMRPGLA----------PEPLSA---PPG
50 60 70 80
120 130 140 150 160 170
pF1KB7 PPPPP--PTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS
::: :: :. .: :: . :: ::...: :..::::::::::::.:: ::.
XP_011 SPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNN
90 100 110 120 130 140
180 190 200 210
pF1KB7 CATAGESCE------------------------DKSPPGPA-SKRVRTAYTSAQLVELEK
..:.: :::::: : :::.::::::::::::::
XP_011 SPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEK
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB7 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP
::::::::::::::::::::::.:::::::::::::::::::::::. : .. :: ::
XP_011 EFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSP
210 220 230 240 250 260
280 290 300 310 320
pF1KB7 P--LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQKR
: . ..:: . .. : .:..::::::.:.. : :.: . : ::..: ::
XP_011 PQPMQSTAGFMNALHSMTP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKY
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB7 --YAAPEFEPHPMASNGGGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSS
:::.::: . .:::.... ..:::::::::. ... . : .:: ...:.:::: :
XP_011 PPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPS
330 340 350 360 370 380
390 400 410 420 430
pF1KB7 ASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSS--QGRLPEAPKLTHL
...::. : . ..:::::.:::::::::.::. :::. ::::::::
XP_011 GNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
390 400 410 420 430
432 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:17:48 2016 done: Fri Nov 4 09:17:49 2016
Total Scan time: 11.750 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]