Result of FASTA (ccds) for
pF1KB7731
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7731, 432 aa
1>>>pF1KB7731 432 - 432 aa - 432 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9067+/-0.00104; mu= -3.0025+/- 0.064
mean_var=467.8502+/-96.208, 0's: 0 Z-trim(117.4): 110 B-trim: 200 in 1/53
Lambda= 0.059295
statistics sampled from 18086 (18200) to 18086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.559), width: 16
Scan time: 3.880
The best scores are: opt bits E(32554)
CCDS2270.1 HOXD3 gene_id:3232|Hs108|chr2 ( 432) 3042 274.0 2e-73
CCDS11528.1 HOXB3 gene_id:3213|Hs108|chr17 ( 431) 1031 102.0 1.2e-21
CCDS82153.1 HOXB3 gene_id:3213|Hs108|chr17 ( 299) 995 98.7 8.1e-21
CCDS82154.1 HOXB3 gene_id:3213|Hs108|chr17 ( 358) 995 98.8 9.1e-21
CCDS5404.1 HOXA3 gene_id:3200|Hs108|chr7 ( 443) 883 89.3 8e-18
>>CCDS2270.1 HOXD3 gene_id:3232|Hs108|chr2 (432 aa)
initn: 3042 init1: 3042 opt: 3042 Z-score: 1431.7 bits: 274.0 E(32554): 2e-73
Smith-Waterman score: 3042; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 WFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NFVESMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSSQ
370 380 390 400 410 420
430
pF1KB7 GRLPEAPKLTHL
::::::::::::
CCDS22 GRLPEAPKLTHL
430
>>CCDS11528.1 HOXB3 gene_id:3213|Hs108|chr17 (431 aa)
initn: 1322 init1: 465 opt: 1031 Z-score: 502.0 bits: 102.0 E(32554): 1.2e-21
Smith-Waterman score: 1367; 50.7% identity (68.7% similar) in 454 aa overlap (17-432:1-431)
10 20 30 40 50
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPG--LFGGYGYSKTTDTYGYSTPHQPYPPPAAASS
::::.::.: . :::::. .. .:...: : :: ::.
CCDS11 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVP--PQPPFQAATH
10 20 30 40
60 70 80 90 100 110
pF1KB7 LDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQ
:. :: ::::.:: . :: :. :::::::::: . : :.. ::
CCDS11 LEGDYQRSACSLQSLGNA-APHAKSKELNGSCMRPGLA----------PEPLSA---PPG
50 60 70 80
120 130 140 150 160 170
pF1KB7 PPPPP--PTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNS
::: :: :. .: :: . :: ::...: :..::::::::::::.:: ::.
CCDS11 SPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNN
90 100 110 120 130 140
180 190 200 210
pF1KB7 CATAGESCE------------------------DKSPPGPA-SKRVRTAYTSAQLVELEK
..:.: :::::: : :::.::::::::::::::
CCDS11 SPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEK
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB7 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSP
::::::::::::::::::::::.:::::::::::::::::::::::. : .. :: ::
CCDS11 EFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSP
210 220 230 240 250 260
280 290 300 310 320
pF1KB7 P--LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQKR
: . ..:: . .. : .:..::::::.:.. : :.: . : ::..: ::
CCDS11 PQPMQSTAGFMNALHSMTP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKY
270 280 290 300 310 320
330 340 350 360 370 380
pF1KB7 --YAAPEFEPHPMASNGGGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSS
:::.::: . .:::.... ..:::::::::. ... . : .:: ...:.:::: :
CCDS11 PPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPS
330 340 350 360 370 380
390 400 410 420 430
pF1KB7 ASVDYSCAAQIPGNHHHGPCDPHPTYTDLSAHHSS--QGRLPEAPKLTHL
...::. : . ..:::::.:::::::::.::. :::. ::::::::
CCDS11 GNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
390 400 410 420 430
>>CCDS82153.1 HOXB3 gene_id:3213|Hs108|chr17 (299 aa)
initn: 921 init1: 465 opt: 995 Z-score: 487.2 bits: 98.7 E(32554): 8.1e-21
Smith-Waterman score: 1010; 54.1% identity (72.6% similar) in 303 aa overlap (164-432:1-299)
140 150 160 170 180
pF1KB7 PGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCE--------
::::::.:: ::. ..:.:
CCDS82 MKESRQTSKLKNNSPGTAEGCGGGGGGGGG
10 20 30
190 200 210 220
pF1KB7 ----------------DKSPPGPA-SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
:::::: : :::.:::::::::::::::::::::::::::::::
CCDS82 GGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 NLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPP--LGGAAGHVAYSGQL
:::::.:::::::::::::::::::::::. : .. :: ::: . ..:: . ..
CCDS82 NLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSM
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 PPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQKR--YAAPEFEPHPMASNG
: .:..::::::.:.. : :.: . : ::..: :: :::.::: . .::
CCDS82 TP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANG
160 170 180 190 200
350 360 370 380 390 400
pF1KB7 GGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSSASVDYSCAAQIPGNHHH
:.... ..:::::::::. ... . : .:: ...:.:::: :...::. : . ..::
CCDS82 GAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHH
210 220 230 240 250 260
410 420 430
pF1KB7 GPCDPHPTYTDLSAHHSS--QGRLPEAPKLTHL
:::.:::::::::.::. :::. ::::::::
CCDS82 GPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
270 280 290
>>CCDS82154.1 HOXB3 gene_id:3213|Hs108|chr17 (358 aa)
initn: 1159 init1: 465 opt: 995 Z-score: 486.3 bits: 98.8 E(32554): 9.1e-21
Smith-Waterman score: 1170; 52.6% identity (71.1% similar) in 363 aa overlap (108-432:3-358)
80 90 100 110 120 130
pF1KB7 APAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPSSPTN--PG
::: : : :::. :.: :. .
CCDS82 MRPGLAPEPLSAPPGSPPPSAAPTSATSNSSN
10 20 30
140 150 160 170 180
pF1KB7 GGVPAKK--PKGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCE--------
:: :.:. :: ::...: :..::::::::::::.:: ::. ..:.:
CCDS82 GGGPSKSGPPKCGPGTNS---TLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGG
40 50 60 70 80
190 200 210 220
pF1KB7 ----------------DKSPPGPA-SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
:::::: : :::.:::::::::::::::::::::::::::::::
CCDS82 GGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMA
90 100 110 120 130 140
230 240 250 260 270 280
pF1KB7 NLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPP--LGGAAGHVAYSGQL
:::::.:::::::::::::::::::::::. : .. :: ::: . ..:: . ..
CCDS82 NLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSM
150 160 170 180 190 200
290 300 310 320 330 340
pF1KB7 PPVPGLAYDAPSPPAFAKSQPNMYGLAA-YTAPLSSCLPQQKR--YAAPEFEPHPMASNG
: .:..::::::.:.. : :.: . : ::..: :: :::.::: . .::
CCDS82 TP----SYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANG
210 220 230 240 250 260
350 360 370 380 390 400
pF1KB7 GGFASANLQGSPVYVGGN-FVESMAPASGP-VFNLGHLSHPSSASVDYSCAAQIPGNHHH
:.... ..:::::::::. ... . : .:: ...:.:::: :...::. : . ..::
CCDS82 GAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHH
270 280 290 300 310 320
410 420 430
pF1KB7 GPCDPHPTYTDLSAHHSS--QGRLPEAPKLTHL
:::.:::::::::.::. :::. ::::::::
CCDS82 GPCEPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
330 340 350
>>CCDS5404.1 HOXA3 gene_id:3200|Hs108|chr7 (443 aa)
initn: 989 init1: 570 opt: 883 Z-score: 433.4 bits: 89.3 E(32554): 8e-18
Smith-Waterman score: 1401; 52.0% identity (72.4% similar) in 450 aa overlap (17-432:1-443)
10 20 30 40 50 60
pF1KB7 MLFEQGQQALELPECTMQKAAYYENPGLFGGYGYSKTTDTYGYSTPHQPYPPPAAASSLD
::::.::.. ...::: : .... ..:.. .:::: :: .. :
CCDS54 MQKATYYDSSAIYGGYPY-QAANGFAYNANQQPYPASAALGA-D
10 20 30 40
70 80 90 100 110
pF1KB7 TDYPGSACSIQSSAPLRAPAH-KGAELNGSCMR-----PGTGNSQGGGGGSQPPGLNSEQ
.: :::.:: : : .: :. ::. .:.: :. : : :: .
CCDS54 GEYHRPACSLQS--PSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPP
50 60 70 80 90 100
120 130 140 150 160
pF1KB7 --QPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGP---NASSS----SATISKQIFPWMK
::::: : ::. :..: :... : .. ...: ::..: : :..::::::::
CCDS54 APQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMK
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB7 ESRQNSKQKNSCATAGESCE-DKSPPGPAS-KRVRTAYTSAQLVELEKEFHFNRYLCRPR
:::::.:::.: ...:::: :::::: :: ::.::::::::::::::::::::::::::
CCDS54 ESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB7 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGAAGHVAYS
:::::::::::::::::::::::::::::::.::.: : ..::: ::: ::.:..
CCDS54 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSM
230 240 250 260 270 280
290 300 310 320 330
pF1KB7 GQLPPVPGLAYDAPSPPAFAKSQPNMYGL--AAYTAPLSSCLPQ---QKRYAA-------
.: : .. :. ::: :.: . ::: :.: : : :: : ::::.:
CCDS54 HSL--VNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGG
290 300 310 320 330
340 350 360 370 380
pF1KB7 -PEFEPHPMASNGGG-FASANLQGSPVYVGGNFVESMAPASGP-VFNLGHLSHPSSASVD
:...:: . .:.: ... ..:::::.:::..:: :. ::: .:.: :: : .:...:
CCDS54 TPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMS-NSGPALFGLTHLPHAASGAMD
340 350 360 370 380 390
390 400 410 420 430
pF1KB7 YSCAAQIPGNHHHGPC--DPHPTYTDLSAHHSSQGRLPEAPKLTHL
:. :. . ..::::: .::::::::..:: ::::. ::::::::
CCDS54 YGGAGPLGSGHHHGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL
400 410 420 430 440
432 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:17:47 2016 done: Fri Nov 4 09:17:48 2016
Total Scan time: 3.880 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]