Result of FASTA (ccds) for
pF1KB7709
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7709, 420 aa
1>>>pF1KB7709 420 - 420 aa - 420 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8403+/-0.000851; mu= 11.8679+/- 0.052
mean_var=120.9137+/-24.702, 0's: 0 Z-trim(110.4): 25 B-trim: 0 in 0/49
Lambda= 0.116637
statistics sampled from 11571 (11587) to 11571 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.356), width: 16
Scan time: 3.230
The best scores are: opt bits E(32554)
CCDS6071.1 HMBOX1 gene_id:79618|Hs108|chr8 ( 420) 2766 476.2 2.5e-134
CCDS83274.1 HMBOX1 gene_id:79618|Hs108|chr8 ( 405) 2471 426.6 2.1e-119
CCDS83273.1 HMBOX1 gene_id:79618|Hs108|chr8 ( 443) 2471 426.6 2.3e-119
>>CCDS6071.1 HMBOX1 gene_id:79618|Hs108|chr8 (420 aa)
initn: 2766 init1: 2766 opt: 2766 Z-score: 2525.1 bits: 476.2 E(32554): 2.5e-134
Smith-Waterman score: 2766; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)
10 20 30 40 50 60
pF1KB7 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD
370 380 390 400 410 420
>>CCDS83274.1 HMBOX1 gene_id:79618|Hs108|chr8 (405 aa)
initn: 2328 init1: 2270 opt: 2471 Z-score: 2257.1 bits: 426.6 E(32554): 2.1e-119
Smith-Waterman score: 2471; 99.7% identity (99.7% similar) in 376 aa overlap (1-376:1-375)
10 20 30 40 50 60
pF1KB7 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS83 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI-AAILESHGIDVQSPGG
310 320 330 340 350
370 380 390 400 410 420
pF1KB7 HSNSDDVDGNDYSEQDDSTSHSDHQDPISLAVEMAAVNHTILALARQGANEIKTEALDDD
::::::::::::::::
CCDS83 HSNSDDVDGNDYSEQDTWQVRNGEEEEGRSSEGGREAEKVEEERRI
360 370 380 390 400
>>CCDS83273.1 HMBOX1 gene_id:79618|Hs108|chr8 (443 aa)
initn: 2614 init1: 2270 opt: 2471 Z-score: 2256.5 bits: 426.6 E(32554): 2.3e-119
Smith-Waterman score: 2690; 94.4% identity (94.4% similar) in 444 aa overlap (1-420:1-443)
10 20 30 40 50 60
pF1KB7 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEILHALETLDRLDQEHSDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 LANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTNPGATLSMRP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 APIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREEI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPGG
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS83 ANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI-AAILESHGIDVQSPGG
310 320 330 340 350
370 380 390
pF1KB7 HSNSDDVDGNDYSEQD------------------------DSTSHSDHQDPISLAVEMAA
:::::::::::::::: ::::::::::::::::::::
CCDS83 HSNSDDVDGNDYSEQDTWQVRNGEEEEGRSSEGGREAEKDDSTSHSDHQDPISLAVEMAA
360 370 380 390 400 410
400 410 420
pF1KB7 VNHTILALARQGANEIKTEALDDD
::::::::::::::::::::::::
CCDS83 VNHTILALARQGANEIKTEALDDD
420 430 440
420 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:48:02 2016 done: Sat Nov 5 09:48:03 2016
Total Scan time: 3.230 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]