FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7705, 419 aa
  1>>>pF1KB7705 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.4594+/-0.00112; mu= -19.8497+/- 0.066
 mean_var=542.4430+/-126.704, 0's: 0 Z-trim(114.7): 460  B-trim: 0 in 0/52
 Lambda= 0.055068
 statistics sampled from 14597 (15231) to 14597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.468), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS41574.1 IKZF5 gene_id:64376|Hs108|chr10        ( 419) 2951 248.9 6.7e-66


>>CCDS41574.1 IKZF5 gene_id:64376|Hs108|chr10             (419 aa)
 initn: 2951 init1: 2951 opt: 2951  Z-score: 1296.6  bits: 248.9 E(32554): 6.7e-66
Smith-Waterman score: 2951; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB7 MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 RDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMIQQPSTQAVVSAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMIQQPSTQAVVSAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPALPVQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPALPVQDP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB7 QLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH
              370       380       390       400       410         




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:11:43 2016 done: Fri Nov  4 09:11:43 2016
 Total Scan time:  3.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]