Result of FASTA (omim) for
pF1KB7702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7702, 461 aa
1>>>pF1KB7702 461 - 461 aa - 461 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7065+/-0.000424; mu= 2.4381+/- 0.026
mean_var=435.2599+/-89.903, 0's: 0 Z-trim(123.3): 386 B-trim: 1421 in 1/61
Lambda= 0.061475
statistics sampled from 42462 (42857) to 42462 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.502), width: 16
Scan time: 9.750
The best scores are: opt bits E(85289)
NP_004950 (OMIM: 184757,612964,612965,613957) ster ( 461) 3209 298.6 2.3e-80
XP_005251928 (OMIM: 184757,612964,612965,613957) P ( 461) 3209 298.6 2.3e-80
XP_011516757 (OMIM: 184757,612964,612965,613957) P ( 461) 3209 298.6 2.3e-80
XP_005245119 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 1900 182.5 2.1e-45
XP_011507684 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 1900 182.5 2.1e-45
NP_001263393 (OMIM: 604453) nuclear receptor subfa ( 469) 1900 182.5 2.1e-45
NP_003813 (OMIM: 604453) nuclear receptor subfamil ( 495) 1900 182.6 2.1e-45
XP_011507686 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 1900 182.6 2.1e-45
XP_011507683 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 1900 182.6 2.1e-45
XP_016856393 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 1900 182.6 2.1e-45
XP_011507682 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 1900 182.6 2.1e-45
NP_995582 (OMIM: 604453) nuclear receptor subfamil ( 541) 1900 182.6 2.2e-45
XP_016877955 (OMIM: 600825) PREDICTED: nuclear rec ( 460) 419 51.2 7.1e-06
XP_011520179 (OMIM: 600825) PREDICTED: nuclear rec ( 467) 419 51.2 7.1e-06
NP_599024 (OMIM: 600825) nuclear receptor ROR-alph ( 468) 419 51.2 7.1e-06
XP_005254641 (OMIM: 600825) PREDICTED: nuclear rec ( 477) 419 51.2 7.2e-06
XP_011520177 (OMIM: 600825) PREDICTED: nuclear rec ( 504) 419 51.2 7.5e-06
NP_599023 (OMIM: 600825) nuclear receptor ROR-alph ( 523) 419 51.3 7.6e-06
XP_011520176 (OMIM: 600825) PREDICTED: nuclear rec ( 525) 419 51.3 7.6e-06
NP_002934 (OMIM: 600825) nuclear receptor ROR-alph ( 548) 419 51.3 7.8e-06
NP_599022 (OMIM: 600825) nuclear receptor ROR-alph ( 556) 419 51.3 7.9e-06
NP_068370 (OMIM: 602408) nuclear receptor subfamil ( 614) 406 50.2 1.9e-05
NP_004443 (OMIM: 602167,608565) steroid hormone re ( 508) 397 49.3 2.9e-05
XP_016876575 (OMIM: 602167,608565) PREDICTED: ster ( 508) 397 49.3 2.9e-05
XP_011534856 (OMIM: 602167,608565) PREDICTED: ster ( 529) 397 49.3 3e-05
XP_011534855 (OMIM: 602167,608565) PREDICTED: ster ( 531) 397 49.3 3e-05
XP_016856133 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
XP_016856136 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
XP_016856129 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_001230441 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
NP_001230442 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856130 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_001230438 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856131 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_001230448 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
NP_001230440 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856128 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_996318 (OMIM: 602969) estrogen-related receptor ( 435) 395 49.0 3e-05
NP_001230444 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856135 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_001127757 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856132 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
XP_016856134 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_001230443 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856127 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
NP_996317 (OMIM: 602969) estrogen-related receptor ( 435) 395 49.0 3e-05
NP_001230439 (OMIM: 602969) estrogen-related recep ( 435) 395 49.0 3e-05
XP_016856138 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
XP_016856137 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 395 49.0 3e-05
XP_016876574 (OMIM: 602167,608565) PREDICTED: ster ( 552) 397 49.3 3e-05
>>NP_004950 (OMIM: 184757,612964,612965,613957) steroido (461 aa)
initn: 3209 init1: 3209 opt: 3209 Z-score: 1563.8 bits: 298.6 E(85289): 2.3e-80
Smith-Waterman score: 3209; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461)
10 20 30 40 50 60
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
370 380 390 400 410 420
430 440 450 460
pF1KB7 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:::::::::::::::::::::::::::::::::::::::::
NP_004 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
430 440 450 460
>>XP_005251928 (OMIM: 184757,612964,612965,613957) PREDI (461 aa)
initn: 3209 init1: 3209 opt: 3209 Z-score: 1563.8 bits: 298.6 E(85289): 2.3e-80
Smith-Waterman score: 3209; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461)
10 20 30 40 50 60
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
370 380 390 400 410 420
430 440 450 460
pF1KB7 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:::::::::::::::::::::::::::::::::::::::::
XP_005 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
430 440 450 460
>>XP_011516757 (OMIM: 184757,612964,612965,613957) PREDI (461 aa)
initn: 3209 init1: 3209 opt: 3209 Z-score: 1563.8 bits: 298.6 E(85289): 2.3e-80
Smith-Waterman score: 3209; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461)
10 20 30 40 50 60
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
370 380 390 400 410 420
430 440 450 460
pF1KB7 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:::::::::::::::::::::::::::::::::::::::::
XP_011 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
430 440 450 460
>>XP_005245119 (OMIM: 604453) PREDICTED: nuclear recepto (469 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.3 bits: 182.5 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:2-468)
10 20 30 40 50
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDK
..:::::::.:::::::::::::::::::::::::::::::::::.::: :.:.:.:::
XP_005 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 TQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFK
:::::::.:::::::.:::.:::::::::::::::::::::::::::::::: :::::.:
XP_005 TQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL----AAGPPAG-PLGDFGAPALPMAVP
::. . . : ..:. ::: :: ::. . : . . :..:
XP_005 LEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 GAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF-SGGP-NVPELILQLL
:: : :: : ::.::::::::.::.: :. . :.: . . ...: ..:.:::.::
XP_005 -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 QLEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKEL
. :::: ::.:.:.. ::. ..:. .. ..:::.:.:::::..:::.::: . :.::
XP_005 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFREL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 EVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVL
.: ::: ::::::::::..::::::: :::::::.:::::.:. . .:.:::. :..:.
XP_005 KVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 RAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHY
.::::: .: .::.:..:::::::..:::::.: :.: ::. .::..::::::::.:.:
XP_005 HAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 PHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:. .:: :::: : :.::.::::.::::.:::....: ::::::::.::.
XP_005 PQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
420 430 440 450 460
>>XP_011507684 (OMIM: 604453) PREDICTED: nuclear recepto (469 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.3 bits: 182.5 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:2-468)
10 20 30 40 50
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDK
..:::::::.:::::::::::::::::::::::::::::::::::.::: :.:.:.:::
XP_011 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 TQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFK
:::::::.:::::::.:::.:::::::::::::::::::::::::::::::: :::::.:
XP_011 TQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL----AAGPPAG-PLGDFGAPALPMAVP
::. . . : ..:. ::: :: ::. . : . . :..:
XP_011 LEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 GAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF-SGGP-NVPELILQLL
:: : :: : ::.::::::::.::.: :. . :.: . . ...: ..:.:::.::
XP_011 -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 QLEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKEL
. :::: ::.:.:.. ::. ..:. .. ..:::.:.:::::..:::.::: . :.::
XP_011 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFREL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 EVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVL
.: ::: ::::::::::..::::::: :::::::.:::::.:. . .:.:::. :..:.
XP_011 KVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 RAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHY
.::::: .: .::.:..:::::::..:::::.: :.: ::. .::..::::::::.:.:
XP_011 HAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 PHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:. .:: :::: : :.::.::::.::::.:::....: ::::::::.::.
XP_011 PQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
420 430 440 450 460
>>NP_001263393 (OMIM: 604453) nuclear receptor subfamily (469 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.3 bits: 182.5 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:2-468)
10 20 30 40 50
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDK
..:::::::.:::::::::::::::::::::::::::::::::::.::: :.:.:.:::
NP_001 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 TQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFK
:::::::.:::::::.:::.:::::::::::::::::::::::::::::::: :::::.:
NP_001 TQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL----AAGPPAG-PLGDFGAPALPMAVP
::. . . : ..:. ::: :: ::. . : . . :..:
NP_001 LEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 GAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF-SGGP-NVPELILQLL
:: : :: : ::.::::::::.::.: :. . :.: . . ...: ..:.:::.::
NP_001 -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 QLEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKEL
. :::: ::.:.:.. ::. ..:. .. ..:::.:.:::::..:::.::: . :.::
NP_001 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFREL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 EVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVL
.: ::: ::::::::::..::::::: :::::::.:::::.:. . .:.:::. :..:.
NP_001 KVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 RAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHY
.::::: .: .::.:..:::::::..:::::.: :.: ::. .::..::::::::.:.:
NP_001 HAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 PHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:. .:: :::: : :.::.::::.::::.:::....: ::::::::.::.
NP_001 PQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
420 430 440 450 460
>>NP_003813 (OMIM: 604453) nuclear receptor subfamily 5 (495 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.0 bits: 182.6 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:28-494)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESC
..:::::::.:::::::::::::::::::::::
NP_003 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 KGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN
::::::::::::.::: :.:.:.::::::::::.:::::::.:::.::::::::::::::
NP_003 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 KFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL-
:::::::::::::::::: :::::.:::. . . : ..:. :::
NP_003 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLP
130 140 150 160 170
160 170 180 190 200
pF1KB7 ---AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQP
:: ::. . : . . :..: :: : :: : ::.::::::::.::.: :.
NP_003 LNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPES
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 GLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPAAFG
. :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. ..::
NP_003 IMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFG
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 LLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSI
:.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: :::::::
NP_003 LMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB7 LLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKF
.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::.:
NP_003 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB7 LNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLG
:.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:::.
NP_003 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN
420 430 440 450 460 470
450 460
pF1KB7 NEMPRNNLLIEMLQAKQT
...: ::::::::.::.
NP_003 GDVPYNNLLIEMLHAKRA
480 490
>>XP_011507686 (OMIM: 604453) PREDICTED: nuclear recepto (501 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.0 bits: 182.6 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:34-500)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTC
..:::::::.::::::::::::::::::::
XP_011 KVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 ESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRG
:::::::::::::::.::: :.:.:.::::::::::.:::::::.:::.:::::::::::
XP_011 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 GRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPK
::::::::::::::::::::: :::::.:::. . . : ..:. :
XP_011 GRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-K
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 GL----AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASP
:: :: ::. . : . . :..: :: : :: : ::.::::::::.::.:
XP_011 GLPLNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSS
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 PQPGLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPA
:. . :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. .
XP_011 PESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB7 AFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKE
.:::.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: ::::
XP_011 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 GSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLD
:::.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::
XP_011 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLD
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 LKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHK
.: :.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:
XP_011 VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYK
430 440 450 460 470 480
450 460
pF1KB7 HLGNEMPRNNLLIEMLQAKQT
::....: ::::::::.::.
XP_011 HLNGDVPYNNLLIEMLHAKRA
490 500
>>XP_011507683 (OMIM: 604453) PREDICTED: nuclear recepto (501 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.0 bits: 182.6 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:34-500)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTC
..:::::::.::::::::::::::::::::
XP_011 KVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 ESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRG
:::::::::::::::.::: :.:.:.::::::::::.:::::::.:::.:::::::::::
XP_011 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 GRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPK
::::::::::::::::::::: :::::.:::. . . : ..:. :
XP_011 GRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-K
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 GL----AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASP
:: :: ::. . : . . :..: :: : :: : ::.::::::::.::.:
XP_011 GLPLNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSS
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 PQPGLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPA
:. . :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. .
XP_011 PESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB7 AFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKE
.:::.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: ::::
XP_011 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 GSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLD
:::.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::
XP_011 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLD
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 LKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHK
.: :.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:
XP_011 VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYK
430 440 450 460 470 480
450 460
pF1KB7 HLGNEMPRNNLLIEMLQAKQT
::....: ::::::::.::.
XP_011 HLNGDVPYNNLLIEMLHAKRA
490 500
>>XP_016856393 (OMIM: 604453) PREDICTED: nuclear recepto (501 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 936.0 bits: 182.6 E(85289): 2.1e-45
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:34-500)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTC
..:::::::.::::::::::::::::::::
XP_016 KVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 ESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRG
:::::::::::::::.::: :.:.:.::::::::::.:::::::.:::.:::::::::::
XP_016 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 GRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPK
::::::::::::::::::::: :::::.:::. . . : ..:. :
XP_016 GRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-K
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 GL----AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASP
:: :: ::. . : . . :..: :: : :: : ::.::::::::.::.:
XP_016 GLPLNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSS
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 PQPGLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPA
:. . :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. .
XP_016 PESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB7 AFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKE
.:::.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: ::::
XP_016 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB7 GSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLD
:::.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::
XP_016 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLD
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB7 LKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHK
.: :.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:
XP_016 VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYK
430 440 450 460 470 480
450 460
pF1KB7 HLGNEMPRNNLLIEMLQAKQT
::....: ::::::::.::.
XP_016 HLNGDVPYNNLLIEMLHAKRA
490 500
461 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:10:31 2016 done: Fri Nov 4 09:10:33 2016
Total Scan time: 9.750 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]