Result of FASTA (ccds) for
pF1KB7702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7702, 461 aa
1>>>pF1KB7702 461 - 461 aa - 461 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.1715+/-0.00107; mu= -0.3616+/- 0.065
mean_var=405.4588+/-82.565, 0's: 0 Z-trim(115.7): 118 B-trim: 433 in 1/54
Lambda= 0.063694
statistics sampled from 16120 (16238) to 16120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.499), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS6856.1 NR5A1 gene_id:2516|Hs108|chr9 ( 461) 3209 308.7 8.1e-84
CCDS60383.1 NR5A2 gene_id:2494|Hs108|chr1 ( 469) 1900 188.4 1.3e-47
CCDS1400.1 NR5A2 gene_id:2494|Hs108|chr1 ( 495) 1900 188.5 1.4e-47
CCDS1401.1 NR5A2 gene_id:2494|Hs108|chr1 ( 541) 1900 188.5 1.5e-47
>>CCDS6856.1 NR5A1 gene_id:2516|Hs108|chr9 (461 aa)
initn: 3209 init1: 3209 opt: 3209 Z-score: 1618.3 bits: 308.7 E(32554): 8.1e-84
Smith-Waterman score: 3209; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461)
10 20 30 40 50 60
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGDFGAPALPMAVPGAHGPL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AGYLYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPFSGGPNVPELILQLLQLEPDEDQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 RARILGCLQEPTKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLL
370 380 390 400 410 420
430 440 450 460
pF1KB7 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:::::::::::::::::::::::::::::::::::::::::
CCDS68 LCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
430 440 450 460
>>CCDS60383.1 NR5A2 gene_id:2494|Hs108|chr1 (469 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 968.1 bits: 188.4 E(32554): 1.3e-47
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:2-468)
10 20 30 40 50
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDK
..:::::::.:::::::::::::::::::::::::::::::::::.::: :.:.:.:::
CCDS60 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 TQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQKKAQIRANGFK
:::::::.:::::::.:::.:::::::::::::::::::::::::::::::: :::::.:
CCDS60 TQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 LETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL----AAGPPAG-PLGDFGAPALPMAVP
::. . . : ..:. ::: :: ::. . : . . :..:
CCDS60 LEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLPLNHAALPPTDYDRSPFVTSPISMTMP
130 140 150 160 170
180 190 200 210 220 230
pF1KB7 GAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQPGLPYGYPEPF-SGGP-NVPELILQLL
:: : :: : ::.::::::::.::.: :. . :.: . . ...: ..:.:::.::
CCDS60 -PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL
180 190 200 210 220 230
240 250 260 270 280
pF1KB7 QLEPDEDQVRARILGCLQEP--TKSRPDQPAAFGLLCRMADQTFISIVDWARRCMVFKEL
. :::: ::.:.:.. ::. ..:. .. ..:::.:.:::::..:::.::: . :.::
CCDS60 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFREL
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 EVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVL
.: ::: ::::::::::..::::::: :::::::.:::::.:. . .:.:::. :..:.
CCDS60 KVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMS
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 RAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHY
.::::: .: .::.:..:::::::..:::::.: :.: ::. .::..::::::::.:.:
CCDS60 HAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB7 PHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT
:. .:: :::: : :.::.::::.::::.:::....: ::::::::.::.
CCDS60 PQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
420 430 440 450 460
>>CCDS1400.1 NR5A2 gene_id:2494|Hs108|chr1 (495 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 967.8 bits: 188.5 E(32554): 1.4e-47
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:28-494)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESC
..:::::::.:::::::::::::::::::::::
CCDS14 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 KGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN
::::::::::::.::: :.:.:.::::::::::.:::::::.:::.::::::::::::::
CCDS14 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 KFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL-
:::::::::::::::::: :::::.:::. . . : ..:. :::
CCDS14 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLP
130 140 150 160 170
160 170 180 190 200
pF1KB7 ---AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQP
:: ::. . : . . :..: :: : :: : ::.::::::::.::.: :.
CCDS14 LNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPES
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 GLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPAAFG
. :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. ..::
CCDS14 IMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFG
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB7 LLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSI
:.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: :::::::
CCDS14 LMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB7 LLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKF
.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::.:
CCDS14 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN
360 370 380 390 400 410
390 400 410 420 430 440
pF1KB7 LNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLG
:.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:::.
CCDS14 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN
420 430 440 450 460 470
450 460
pF1KB7 NEMPRNNLLIEMLQAKQT
...: ::::::::.::.
CCDS14 GDVPYNNLLIEMLHAKRA
480 490
>>CCDS1401.1 NR5A2 gene_id:2494|Hs108|chr1 (541 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 967.4 bits: 188.5 E(32554): 1.5e-47
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (1-460:74-540)
10 20 30
pF1KB7 MDYSYDEDLDELCPVCGDKVSGYHYGLLTC
..:::::::.::::::::::::::::::::
CCDS14 KVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 ESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRG
:::::::::::::::.::: :.:.:.::::::::::.:::::::.:::.:::::::::::
CCDS14 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB7 GRNKFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPK
::::::::::::::::::::: :::::.:::. . . : ..:. :
CCDS14 GRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-K
170 180 190 200 210 220
160 170 180 190 200
pF1KB7 GL----AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASP
:: :: ::. . : . . :..: :: : :: : ::.::::::::.::.:
CCDS14 GLPLNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSS
230 240 250 260 270 280
210 220 230 240 250 260
pF1KB7 PQPGLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPA
:. . :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. .
CCDS14 PESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS
290 300 310 320 330 340
270 280 290 300 310 320
pF1KB7 AFGLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKE
.:::.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: ::::
CCDS14 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE
350 360 370 380 390 400
330 340 350 360 370 380
pF1KB7 GSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLD
:::.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::
CCDS14 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLD
410 420 430 440 450 460
390 400 410 420 430 440
pF1KB7 LKFLNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHK
.: :.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:
CCDS14 VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYK
470 480 490 500 510 520
450 460
pF1KB7 HLGNEMPRNNLLIEMLQAKQT
::....: ::::::::.::.
CCDS14 HLNGDVPYNNLLIEMLHAKRA
530 540
461 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:10:31 2016 done: Fri Nov 4 09:10:31 2016
Total Scan time: 3.130 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]