Result of FASTA (ccds) for
pF1KB7691
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7691, 349 aa
1>>>pF1KB7691 349 - 349 aa - 349 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5523+/- 0.001; mu= 8.3400+/- 0.061
mean_var=235.3970+/-51.095, 0's: 0 Z-trim(111.7): 124 B-trim: 0 in 0/51
Lambda= 0.083594
statistics sampled from 12478 (12603) to 12478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.387), width: 16
Scan time: 2.930
The best scores are: opt bits E(32554)
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 2437 306.7 1.9e-83
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 1872 238.5 6.4e-63
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 592 84.2 2e-16
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 585 83.4 3.6e-16
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 562 80.6 2.4e-15
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 562 80.6 2.5e-15
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 475 70.1 3.5e-12
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 475 70.1 3.5e-12
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 443 66.3 5.2e-11
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 1611.5 bits: 306.7 E(32554): 1.9e-83
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ALREDGLFCRADHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ALREDGLFCRADHDVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 IMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFALQ
250 260 270 280 290 300
310 320 330 340
pF1KB7 SDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
310 320 330 340
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 1920 init1: 1813 opt: 1872 Z-score: 1243.1 bits: 238.5 E(32554): 6.4e-63
Smith-Waterman score: 1872; 75.6% identity (91.4% similar) in 349 aa overlap (1-348:11-358)
10 20 30 40 50
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQ
.: ::: ::: ..:::::.:::::.::::::::::::::::::::.:
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 YLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVAC
::::.::::::::::::::::.::.:::::::..:::..:.:::::..::::::::: .:
CCDS10 YLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVC
70 80 90 100 110 120
120 130 140 150 160
pF1KB7 SRQLIPGDEFALREDGLFCRADHDVV-ERASLGAGDPLSPLHPARPLQMAAEPISARQPA
::::.:::::.::: :.::::: .. :::. :. .:: :: :.. . :.::::
CCDS10 SRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRSPGPLPGARGLHLP-DAGSGRQPA
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 LRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 QNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQP
:::::::::.::.:::::::: .:::..::.::::.::.:: ::....:.. ::::.:::
CCDS10 QNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 PWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
:::.::.::::::.:::::::::.:::.: .::.::.:.:.:::::::::::: ::.:
CCDS10 PWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSMVPSPVET
300 310 320 330 340 350
>>CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 (382 aa)
initn: 468 init1: 317 opt: 592 Z-score: 408.6 bits: 84.2 E(32554): 2e-16
Smith-Waterman score: 595; 35.0% identity (62.7% similar) in 300 aa overlap (15-310:33-314)
10 20 30 40
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
:.: :: : :...::.. : :: :..
CCDS12 DGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLN-DSFWHEQCVQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
:: :.. :. ::: :: : ::: :: .:...::. : ... :.:::::...:::. :
CCDS12 CASCKEPLE--TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSC
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 FRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPLSP----LHPARPLQMAA
: : .: ::: ::::.:.: :.:..:.. :: :. .: . . : .:
CCDS12 FCCCVCERQLQKGDEFVLKEGQLLCKGDYEK-ERELLSLVSPAASDSGKSDDEESLCKSA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
. ... : . . ::.:. : ::.:. .: ..... . .. .: ..: :. :::
CCDS12 HG-AGKGTAEEGKDHKRPK---RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQAN
: ::..:::::.: : :: . . :::: .:. : : .... ... .: . :
CCDS12 SVRVVQVWFQNQRAKMKK----LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIM--N
240 250 260 270 280
290 300 310 320 330 340
pF1KB7 PVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPN
: . : ..:. :: .. :.:
CCDS12 PY--TALPTPQQLLA--IEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTS
290 300 310 320 330 340
>>CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 (406 aa)
initn: 466 init1: 288 opt: 585 Z-score: 403.7 bits: 83.4 E(32554): 3.6e-16
Smith-Waterman score: 585; 32.5% identity (58.5% similar) in 323 aa overlap (15-333:54-368)
10 20 30 40
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
..: :: : :....::. . :: ::.
CCDS55 MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVNES-SWHEECLQ
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
:: :.: : :: . :: : :::.:: .:.. ::. : .. ..::::: :::. :
CCDS55 CAACQQALTTSC--YFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGC
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB7 FRCVACSRQLIPGDEFALREDGLFCRADH----DVVERASLGAGDPLSPLHPARPLQMAA
: : .: ::: ::::.:.: :.:..:. :.. .: .: .. .. :
CCDS55 FCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAK
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB7 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
: : :.:.. : ::.:. .: ..... . .. .: ..: :. :::
CCDS55 GQGS--QSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
210 220 230 240 250
230 240 250 260 270 280
pF1KB7 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQAN
: ::..:::::.: : :: . .: ::.: :.. :: : : . . : .. ...
CCDS55 SVRVVQVWFQNQRAKMKKLARRHQQ-QQEQQNSQRLGQGEPG-PGQGLGQEVLSSRMEGM
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB7 PVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPN
. :: . . . . .. ::: .. . ::..: .. : .:
CCDS55 MASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQM-PGNDSIFHDIDSDTSLTSLSDC
320 330 340 350 360 370
pF1KB7 SMVASPIEA
CCDS55 FLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
380 390 400
>>CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 (395 aa)
initn: 466 init1: 288 opt: 562 Z-score: 388.8 bits: 80.6 E(32554): 2.4e-15
Smith-Waterman score: 600; 32.3% identity (59.4% similar) in 347 aa overlap (15-345:54-391)
10 20 30 40
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
..: :: : :....::. . :: ::.
CCDS68 MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVN-ESSWHEECLQ
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
:: :.: : : :. :: : :::.:: .:.. ::. : .. ..::::: :::. :
CCDS68 CAACQQALTTS--CYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGC
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB7 FRCVACSRQLIPGDEFALREDGLFCRADH----DVVERASLGAGDPLSPLHPARPLQMAA
: : .: ::: ::::.:.: :.:..:. :.. .: .: .. .. :
CCDS68 FCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAK
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB7 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
: : :.:.. : ::.:. .: ..... . .. .: ..: :. :::
CCDS68 GQGS--QSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
210 220 230 240 250
230 240 250 260 270
pF1KB7 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDK-------TNIQGMTGTPMVAASPERH
: ::..:::::.: : :: . .: :.:: ... . ..:: .. : :...
CCDS68 SVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQ
260 270 280 290 300 310
280 290 300 310 320
pF1KB7 DGGLQANPVEV-----QSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEV
... .: :. :: .: .. :::. . .:...:. ::...::
CCDS68 IVAMEQSPYGSSDPFQQGLTPPQMPGND-SIFHDIDSDT--SLTSLSDCFLGSSDVGSLQ
320 330 340 350 360 370
330 340
pF1KB7 ASMSSQLPDTPNSMVASPIEA
: ... . : :: .:
CCDS68 ARVGNPI-DRLYSMQSSYFAS
380 390
>>CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 (402 aa)
initn: 466 init1: 288 opt: 562 Z-score: 388.7 bits: 80.6 E(32554): 2.5e-15
Smith-Waterman score: 585; 31.7% identity (58.9% similar) in 353 aa overlap (15-345:54-398)
10 20 30 40
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
..: :: : :....::. . :: ::.
CCDS55 MLDGIKMEEHALRPGPATLGVLLGSDCPHPAVCEGCQRPISDRFLMRVN-ESSWHEECLQ
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
:: :.: : : :. :: : :::.:: .:.. ::. : .. ..::::: :::. :
CCDS55 CAACQQALTTS--CYFRDRKLYCKQDYQQLFAAKCSGCMEKIAPTEFVMRALECVYHLGC
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB7 FRCVACSRQLIPGDEFALREDGLFCRADH----DVVERASLGAGDPLSPLHPARPLQMAA
: : .: ::: ::::.:.: :.:..:. :.. .: .: .. .. :
CCDS55 FCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSSVSPDESDSVKSEDEDGDMKPAK
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB7 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
: : :.:.. : ::.:. .: ..... . .. .: ..: :. :::
CCDS55 GQGS--QSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
210 220 230 240 250
230 240 250 260 270
pF1KB7 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDK-------TNIQGMTGTPMVAASPERH
: ::..:::::.: : :: . .: :.:: ... . ..:: .. : :...
CCDS55 SVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSSRMEGMMASYTPLAPPQQQ
260 270 280 290 300 310
280 290 300 310 320
pF1KB7 DGGLQANPVEV-----QSYQPPWKV---LSDFALQS---DIDQPAFQQLVNFSEGGPGSN
... .: :. :: .. .. .: :::. . .:...:. ::.
CCDS55 IVAMEQSPYGSSDPFQQGLTPPQMPGDHMNPYGNDSIFHDIDSDT--SLTSLSDCFLGSS
320 330 340 350 360 370
330 340
pF1KB7 STGSEVASMSSQLPDTPNSMVASPIEA
..:: : ... . : :: .:
CCDS55 DVGSLQARVGNPI-DRLYSMQSSYFAS
380 390 400
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 421 init1: 259 opt: 475 Z-score: 332.2 bits: 70.1 E(32554): 3.5e-12
Smith-Waterman score: 604; 34.5% identity (61.7% similar) in 313 aa overlap (3-281:48-347)
10 20 30
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRV
: : :: . . .::.:::..: :.: : .
CCDS30 GGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYL-L
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB7 SPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGFSKNDF
. : .:: :::: ::. :. :::..::. :::.:: : ... .::.: .:.: ...
CCDS30 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEM
80 90 100 110 120 130
100 110 120 130
pF1KB7 VMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV------------ERA
:::::..:::. :: : .:.. : ::.:..... ..::: ... : :
CCDS30 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELA
140 150 160 170 180 190
140 150 160 170
pF1KB7 SLGAGDPLSPLHPARPLQMAAEPISARQPAL---------------RPHVHK--QP----
. ..: : .. . .: ..: . ..::: :. . ::
CCDS30 AKSGGLALPYFNGTGTVQ-KGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
200 210 220 230 240 250
180 190 200 210 220 230
pF1KB7 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK
.:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : .
CCDS30 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FR
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB7 RSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFA
:... :.. ::.. :: . : : :.: . :
CCDS30 RNLLR---QENGGVDKAD-----GTSLPA--PPSADSGALTPPGTATTLTDLTNPTITVV
320 330 340 350 360
300 310 320 330 340
pF1KB7 LQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
CCDS30 TSVTSNMDSHESGSPSQTTLTNLF
370 380
>>CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 (397 aa)
initn: 421 init1: 259 opt: 475 Z-score: 332.1 bits: 70.1 E(32554): 3.5e-12
Smith-Waterman score: 604; 34.5% identity (61.7% similar) in 313 aa overlap (3-281:57-356)
10 20 30
pF1KB7 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRV
: : :: . . .::.:::..: :.: : .
CCDS13 GGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYL-L
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 SPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGFSKNDF
. : .:: :::: ::. :. :::..::. :::.:: : ... .::.: .:.: ...
CCDS13 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEM
90 100 110 120 130 140
100 110 120 130
pF1KB7 VMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV------------ERA
:::::..:::. :: : .:.. : ::.:..... ..::: ... : :
CCDS13 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELA
150 160 170 180 190 200
140 150 160 170
pF1KB7 SLGAGDPLSPLHPARPLQMAAEPISARQPAL---------------RPHVHK--QP----
. ..: : .. . .: ..: . ..::: :. . ::
CCDS13 AKSGGLALPYFNGTGTVQ-KGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB7 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK
.:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : .
CCDS13 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FR
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB7 RSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFA
:... :.. ::.. :: . : : :.: . :
CCDS13 RNLLR---QENGGVDKAD-----GTSLPA--PPSADSGALTPPGTATTLTDLTNPTITVV
330 340 350 360 370
300 310 320 330 340
pF1KB7 LQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
CCDS13 TSVTSNMDSHESGSPSQTTLTNLF
380 390
>>CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 (406 aa)
initn: 398 init1: 236 opt: 443 Z-score: 311.1 bits: 66.3 E(32554): 5.2e-11
Smith-Waterman score: 573; 35.3% identity (61.0% similar) in 323 aa overlap (3-269:34-351)
10 20
pF1KB7 MGDMGD-----PPKKKRLISLCVGCGNQIHDQ
: :: : .. .::.:::..: :.
CCDS68 HSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKISDR
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB7 YILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGF
: : .. : .:: :::: ::. :. ::: .::. :::.:: : ... .::.: .:.
CCDS68 YYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGI
70 80 90 100 110 120
90 100 110 120 130
pF1KB7 SKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRA--------------D
: ...:::::. :::..:: :..:...: ::.:..... ..:: .
CCDS68 SASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFN
130 140 150 160 170 180
140 150 160
pF1KB7 H-DVV---------ERASLGAG--DPLS-P-------LHPARPLQMAAE-P---ISARQP
: ::. . :.:::. .::. : .. .:: . . : ..: .
CCDS68 HADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNA
190 200 210 220 230 240
170 180 190 200 210
pF1KB7 ALR------PHVHK-QP----EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEM
:: :. . :: .:: :.:: ....::.:... .: : ::: .::..
CCDS68 ALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQK
250 260 270 280 290 300
220 230 240 250 260 270
pF1KB7 TGLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDK-TNIQGMTGTPMVAASPERHDGG
:::. ::..::::: : : .:... :.. :: :. .:::: ::
CCDS68 TGLTKRVLQVWFQNARAK-FRRNLLR---QENTGVDKSTDAALQTGTPSGPASELSNASL
310 320 330 340 350
280 290 300 310 320 330
pF1KB7 LQANPVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLP
CCDS68 SPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
360 370 380 390 400
349 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:09:02 2016 done: Sat Nov 5 04:09:03 2016
Total Scan time: 2.930 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]