Result of FASTA (omim) for
pF1KB7675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7675, 341 aa
1>>>pF1KB7675 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6574+/-0.000388; mu= -3.9756+/- 0.024
mean_var=200.9850+/-42.047, 0's: 0 Z-trim(119.5): 66 B-trim: 45 in 1/53
Lambda= 0.090467
statistics sampled from 33441 (33507) to 33441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.393), width: 16
Scan time: 6.840
The best scores are: opt bits E(85289)
NP_006185 (OMIM: 167416,604625) paired box protein ( 341) 2317 314.6 2e-85
NP_006183 (OMIM: 167411,615560) paired box protein ( 534) 1378 192.1 2.3e-48
NP_001244025 (OMIM: 167411,615560) paired box prot ( 457) 1364 190.3 7.1e-48
NP_000269 (OMIM: 120330,167409,191830,616002) pair ( 394) 685 101.6 3e-21
NP_003979 (OMIM: 120330,167409,191830,616002) pair ( 396) 685 101.6 3e-21
NP_003980 (OMIM: 120330,167409,191830,616002) pair ( 409) 685 101.6 3.1e-21
NP_003978 (OMIM: 120330,167409,191830,616002) pair ( 417) 685 101.6 3.1e-21
NP_001291498 (OMIM: 120330,167409,191830,616002) p ( 425) 685 101.6 3.2e-21
XP_016871776 (OMIM: 120330,167409,191830,616002) P ( 427) 685 101.6 3.2e-21
NP_003981 (OMIM: 120330,167409,191830,616002) pair ( 432) 685 101.6 3.2e-21
XP_016871775 (OMIM: 120330,167409,191830,616002) P ( 440) 685 101.6 3.3e-21
XP_016871774 (OMIM: 120330,167409,191830,616002) P ( 448) 685 101.6 3.3e-21
XP_016871773 (OMIM: 120330,167409,191830,616002) P ( 463) 685 101.6 3.4e-21
XP_016871778 (OMIM: 120330,167409,191830,616002) P ( 374) 674 100.2 7.7e-21
XP_016871772 (OMIM: 120330,167409,191830,616002) P ( 483) 675 100.3 8.8e-21
XP_016871771 (OMIM: 120330,167409,191830,616002) P ( 483) 675 100.3 8.8e-21
XP_016871770 (OMIM: 120330,167409,191830,616002) P ( 496) 675 100.3 9e-21
XP_016871777 (OMIM: 120330,167409,191830,616002) P ( 424) 669 99.5 1.3e-20
XP_011510096 (OMIM: 167415,218700) PREDICTED: pair ( 387) 667 99.3 1.5e-20
NP_054698 (OMIM: 167415,218700) paired box protein ( 287) 661 98.4 2e-20
NP_039246 (OMIM: 167415,218700) paired box protein ( 398) 664 98.9 2e-20
XP_016860368 (OMIM: 167415,218700) PREDICTED: pair ( 402) 664 98.9 2e-20
NP_003457 (OMIM: 167415,218700) paired box protein ( 450) 665 99.0 2e-20
NP_039247 (OMIM: 167415,218700) paired box protein ( 321) 658 98.0 2.9e-20
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 660 98.4 3.4e-20
XP_011510095 (OMIM: 167415,218700) PREDICTED: pair ( 444) 656 97.8 4.5e-20
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 656 97.9 5.2e-20
XP_011510093 (OMIM: 167415,218700) PREDICTED: pair ( 500) 654 97.6 6e-20
XP_011510094 (OMIM: 167415,218700) PREDICTED: pair ( 455) 653 97.5 6.1e-20
XP_011510092 (OMIM: 167415,218700) PREDICTED: pair ( 507) 654 97.6 6.1e-20
XP_016860367 (OMIM: 167415,218700) PREDICTED: pair ( 459) 653 97.5 6.1e-20
NP_039230 (OMIM: 122880,148820,193500,268220,60659 ( 206) 643 96.0 7.5e-20
NP_000429 (OMIM: 122880,148820,193500,268220,60659 ( 215) 643 96.0 7.8e-20
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 648 96.8 8.6e-20
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 648 96.8 8.7e-20
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 648 96.8 1e-19
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 648 96.8 1e-19
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 648 96.8 1e-19
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 647 96.7 1.1e-19
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 647 96.7 1.2e-19
NP_001267482 (OMIM: 167414,615545) paired box prot ( 319) 641 95.8 1.3e-19
NP_001267483 (OMIM: 167414,615545) paired box prot ( 348) 641 95.8 1.4e-19
NP_001267479 (OMIM: 167414,615545) paired box prot ( 295) 638 95.4 1.6e-19
NP_001267478 (OMIM: 167414,615545) paired box prot ( 324) 638 95.4 1.8e-19
NP_001267481 (OMIM: 167414,615545) paired box prot ( 328) 638 95.4 1.8e-19
NP_001267476 (OMIM: 167414,615545) paired box prot ( 357) 638 95.5 1.9e-19
NP_001267477 (OMIM: 167414,615545) paired box prot ( 362) 638 95.5 1.9e-19
XP_005251538 (OMIM: 167414,615545) PREDICTED: pair ( 390) 638 95.5 2.1e-19
NP_057953 (OMIM: 167414,615545) paired box protein ( 391) 638 95.5 2.1e-19
XP_011516199 (OMIM: 167414,615545) PREDICTED: pair ( 409) 638 95.5 2.2e-19
>>NP_006185 (OMIM: 167416,604625) paired box protein Pax (341 aa)
initn: 2317 init1: 2317 opt: 2317 Z-score: 1654.7 bits: 314.6 E(85289): 2e-85
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 VNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGH
250 260 270 280 290 300
310 320 330 340
pF1KB7 GWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
:::::::::::::::::::::::::::::::::::::::::
NP_006 GWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
310 320 330 340
>>NP_006183 (OMIM: 167411,615560) paired box protein Pax (534 aa)
initn: 1192 init1: 1095 opt: 1378 Z-score: 989.3 bits: 192.1 E(85289): 2.3e-48
Smith-Waterman score: 1378; 63.3% identity (79.7% similar) in 354 aa overlap (1-339:95-435)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:: ..:::::::::::::::::::::::::
NP_006 GGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: :
NP_006 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:: :::::::::::::::::::::::::::::::::::::::.::: : :.. :: :
NP_006 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQ--PPS
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 QPALPYNHIYSYP--SPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSIT
::.:::::::.:: ::.. ..::. . ::::. : :..::.:::.:::..:::::..
NP_006 QPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRTFM
250 260 270 280 290 300
210 220 230 240 250 260
pF1KB7 DQV-----SDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLP
.:. :... : :::.:.:....:. :::. : ::::::: ::: . :: :. . :
NP_006 EQTGALAGSEGTAY-SPKMEDWAGVNRTAFPAT-P-AVNGLEKPALEADIKYTQSASTLS
310 320 330 340 350
270 280 290 300 310
pF1KB7 AVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVA-GHGWQHAGGTSLSP-------HNC
:::.:. : . ::. : . .::: .::.: : : : : :.: :.
NP_006 AVGGFLPACA---YPASNQ---HGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGG
360 370 380 390 400 410
320 330 340
pF1KB7 DIPASLAFKGMQAAREGSHSVTASAL
.. :...:: . .:::: . :.
NP_006 ELAAAMTFK--HPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADP
420 430 440 450 460 470
>>NP_001244025 (OMIM: 167411,615560) paired box protein (457 aa)
initn: 1192 init1: 1095 opt: 1364 Z-score: 980.5 bits: 190.3 E(85289): 7.1e-48
Smith-Waterman score: 1364; 64.6% identity (80.5% similar) in 339 aa overlap (1-324:95-422)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:: ..:::::::::::::::::::::::::
NP_001 GGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: :
NP_001 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:: :::::::::::::::::::::::::::::::::::::::.::: : :.. : ::
NP_001 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASK--QPPS
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 QPALPYNHIYSYP--SPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSIT
::.:::::::.:: ::.. ..::. . ::::. : :..::.:::.:::..:::::..
NP_001 QPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRTFM
250 260 270 280 290 300
210 220 230 240 250 260
pF1KB7 DQV-----SDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLP
.:. :... : :::.:.:....:. :::. : ::::::: ::: . :: :. . :
NP_001 EQTGALAGSEGTAY-SPKMEDWAGVNRTAFPAT-P-AVNGLEKPALEADIKYTQSASTLS
310 320 330 340 350
270 280 290 300 310
pF1KB7 AVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVA-GHGWQHAGGTSLSP-------HNC
:::.:. : . ::. : . .::: .::.: : : : : :.: :.
NP_001 AVGGFLPACA---YPASNQ---HGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGG
360 370 380 390 400 410
320 330 340
pF1KB7 DIPASLAFKGMQAAREGSHSVTASAL
.. :...::
NP_001 ELAAAMTFKHPSREVADRKPPSSGSKAPDALSSLHGLPIPASTS
420 430 440 450
>>NP_000269 (OMIM: 120330,167409,191830,616002) paired b (394 aa)
initn: 729 init1: 662 opt: 685 Z-score: 502.6 bits: 101.6 E(85289): 3e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
NP_000 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
NP_000 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
NP_000 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
NP_000 SASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTF
180 190 200 210 220 230
>>NP_003979 (OMIM: 120330,167409,191830,616002) paired b (396 aa)
initn: 690 init1: 662 opt: 685 Z-score: 502.5 bits: 101.6 E(85289): 3e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
NP_003 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
NP_003 SASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTF
180 190 200 210 220 230
>>NP_003980 (OMIM: 120330,167409,191830,616002) paired b (409 aa)
initn: 697 init1: 662 opt: 685 Z-score: 502.3 bits: 101.6 E(85289): 3.1e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
NP_003 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
NP_003 SASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTF
180 190 200 210 220 230
>>NP_003978 (OMIM: 120330,167409,191830,616002) paired b (417 aa)
initn: 726 init1: 662 opt: 685 Z-score: 502.2 bits: 101.6 E(85289): 3.1e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
NP_003 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
NP_003 SASNDPV--GSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEG
180 190 200 210 220 230
>>NP_001291498 (OMIM: 120330,167409,191830,616002) paire (425 aa)
initn: 729 init1: 662 opt: 685 Z-score: 502.0 bits: 101.6 E(85289): 3.2e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:44-227)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:.:. : :::::::::::::::...: :::
NP_001 LRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIV
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::. :.::::::::::::::::::::.:: ::::: ::.::::::.:.:: :: .: :
NP_001 ELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:...: .:::::::::::.:.::. .:::::::.::.:.:. :: . . . :
NP_001 KRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTG
140 150 160 170 180
160 170 180 190 200 210
pF1KB7 QPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQ
: .. . : :: ...:.. :. : .: : ...::.
NP_001 VTAPGHTIVPSTASPPVSSASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VSDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVGSFVS
NP_001 DSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTP
250 260 270 280 290 300
>>XP_016871776 (OMIM: 120330,167409,191830,616002) PREDI (427 aa)
initn: 690 init1: 662 opt: 685 Z-score: 502.0 bits: 101.6 E(85289): 3.2e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:44-227)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:.:. : :::::::::::::::...: :::
XP_016 LRGDTAAAAALLPLLCLPMDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIV
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::. :.::::::::::::::::::::.:: ::::: ::.::::::.:.:: :: .: :
XP_016 ELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:...: .:::::::::::.:.::. .:::::::.::.:.:. :: . . . :
XP_016 KRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTG
140 150 160 170 180
160 170 180 190 200 210
pF1KB7 QPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQ
: .. . : :: ...:.. :. : .: : ...::.
XP_016 VTAPGHTIVPSTASPPVSSASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNG
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB7 VSDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVGSFVS
XP_016 DSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTP
250 260 270 280 290 300
>>NP_003981 (OMIM: 120330,167409,191830,616002) paired b (432 aa)
initn: 687 init1: 662 opt: 685 Z-score: 501.9 bits: 101.6 E(85289): 3.2e-21
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
NP_003 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
NP_003 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
NP_003 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
NP_003 SASNDPV--GSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEG
180 190 200 210 220 230
341 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:31:32 2016 done: Fri Nov 4 21:31:33 2016
Total Scan time: 6.840 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]