Result of FASTA (ccds) for
pF1KB7675
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7675, 341 aa
1>>>pF1KB7675 341 - 341 aa - 341 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8354+/-0.000927; mu= 0.5890+/- 0.056
mean_var=181.6648+/-36.849, 0's: 0 Z-trim(111.9): 36 B-trim: 0 in 0/53
Lambda= 0.095157
statistics sampled from 12736 (12771) to 12736 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.392), width: 16
Scan time: 3.030
The best scores are: opt bits E(32554)
CCDS9662.1 PAX9 gene_id:5083|Hs108|chr14 ( 341) 2317 329.9 1.8e-90
CCDS13146.2 PAX1 gene_id:5075|Hs108|chr20 ( 534) 1378 201.1 1.7e-51
CCDS74709.1 PAX1 gene_id:5075|Hs108|chr20 ( 457) 1364 199.2 5.6e-51
CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 ( 394) 685 105.9 5.7e-23
CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 ( 396) 685 105.9 5.7e-23
CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 ( 398) 664 103.0 4.2e-22
CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 ( 450) 665 103.2 4.3e-22
CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 ( 287) 661 102.6 4.3e-22
CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 ( 321) 658 102.2 6.2e-22
CCDS46522.1 PAX3 gene_id:5077|Hs108|chr2 ( 483) 660 102.5 7.3e-22
CCDS44075.1 PAX7 gene_id:5081|Hs108|chr1 ( 518) 656 102.0 1.1e-21
CCDS2451.1 PAX3 gene_id:5077|Hs108|chr2 ( 206) 643 100.0 1.8e-21
CCDS46523.1 PAX3 gene_id:5077|Hs108|chr2 ( 215) 643 100.0 1.9e-21
CCDS2450.1 PAX3 gene_id:5077|Hs108|chr2 ( 403) 648 100.9 2e-21
CCDS2449.1 PAX3 gene_id:5077|Hs108|chr2 ( 407) 648 100.9 2e-21
CCDS42826.1 PAX3 gene_id:5077|Hs108|chr2 ( 479) 648 100.9 2.3e-21
CCDS42825.1 PAX3 gene_id:5077|Hs108|chr2 ( 484) 648 100.9 2.3e-21
CCDS2448.1 PAX3 gene_id:5077|Hs108|chr2 ( 505) 648 100.9 2.4e-21
CCDS44074.1 PAX7 gene_id:5081|Hs108|chr1 ( 505) 647 100.8 2.6e-21
CCDS186.1 PAX7 gene_id:5081|Hs108|chr1 ( 520) 647 100.8 2.7e-21
CCDS65042.1 PAX5 gene_id:5079|Hs108|chr9 ( 319) 641 99.8 3.1e-21
CCDS65043.1 PAX5 gene_id:5079|Hs108|chr9 ( 348) 641 99.9 3.4e-21
CCDS65044.1 PAX5 gene_id:5079|Hs108|chr9 ( 295) 638 99.4 3.9e-21
CCDS65045.1 PAX5 gene_id:5079|Hs108|chr9 ( 324) 638 99.4 4.2e-21
CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9 ( 328) 638 99.4 4.3e-21
CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9 ( 357) 638 99.5 4.6e-21
CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9 ( 362) 638 99.5 4.6e-21
CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9 ( 391) 638 99.5 4.9e-21
CCDS31451.1 PAX6 gene_id:5080|Hs108|chr11 ( 422) 604 94.8 1.3e-19
CCDS5797.1 PAX4 gene_id:5078|Hs108|chr7 ( 343) 483 78.2 1.1e-14
CCDS31452.1 PAX6 gene_id:5080|Hs108|chr11 ( 436) 396 66.3 5.4e-11
>>CCDS9662.1 PAX9 gene_id:5083|Hs108|chr14 (341 aa)
initn: 2317 init1: 2317 opt: 2317 Z-score: 1737.7 bits: 329.9 E(32554): 1.8e-90
Smith-Waterman score: 2317; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 AIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 AIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 VNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGH
250 260 270 280 290 300
310 320 330 340
pF1KB7 GWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
:::::::::::::::::::::::::::::::::::::::::
CCDS96 GWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
310 320 330 340
>>CCDS13146.2 PAX1 gene_id:5075|Hs108|chr20 (534 aa)
initn: 1192 init1: 1095 opt: 1378 Z-score: 1038.1 bits: 201.1 E(32554): 1.7e-51
Smith-Waterman score: 1378; 63.3% identity (79.7% similar) in 354 aa overlap (1-339:95-435)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:: ..:::::::::::::::::::::::::
CCDS13 GGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: :
CCDS13 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:: :::::::::::::::::::::::::::::::::::::::.::: : :.. :: :
CCDS13 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQ--PPS
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 QPALPYNHIYSYP--SPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSIT
::.:::::::.:: ::.. ..::. . ::::. : :..::.:::.:::..:::::..
CCDS13 QPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRTFM
250 260 270 280 290 300
210 220 230 240 250 260
pF1KB7 DQV-----SDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLP
.:. :... : :::.:.:....:. :::. : ::::::: ::: . :: :. . :
CCDS13 EQTGALAGSEGTAY-SPKMEDWAGVNRTAFPAT-P-AVNGLEKPALEADIKYTQSASTLS
310 320 330 340 350
270 280 290 300 310
pF1KB7 AVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVA-GHGWQHAGGTSLSP-------HNC
:::.:. : . ::. : . .::: .::.: : : : : :.: :.
CCDS13 AVGGFLPACA---YPASNQ---HGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGG
360 370 380 390 400 410
320 330 340
pF1KB7 DIPASLAFKGMQAAREGSHSVTASAL
.. :...:: . .:::: . :.
CCDS13 ELAAAMTFK--HPSREGSLPAPAARPRTPSVAYTDCPSRPRPPRGSSPRTRARRERQADP
420 430 440 450 460 470
>>CCDS74709.1 PAX1 gene_id:5075|Hs108|chr20 (457 aa)
initn: 1192 init1: 1095 opt: 1364 Z-score: 1028.7 bits: 199.2 E(32554): 5.6e-51
Smith-Waterman score: 1364; 64.6% identity (80.5% similar) in 339 aa overlap (1-324:95-422)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIV
:: ..:::::::::::::::::::::::::
CCDS74 GGAQALPDCAGPSPGHPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB7 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTY
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: :
CCDS74 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB7 KQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTP
:: :::::::::::::::::::::::::::::::::::::::.::: : :.. : ::
CCDS74 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASK--QPPS
190 200 210 220 230 240
160 170 180 190 200
pF1KB7 QPALPYNHIYSYP--SPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSIT
::.:::::::.:: ::.. ..::. . ::::. : :..::.:::.:::..:::::..
CCDS74 QPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPGTAGHVSIPRSWPSAHSVSNILGIRTFM
250 260 270 280 290 300
210 220 230 240 250 260
pF1KB7 DQV-----SDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLP
.:. :... : :::.:.:....:. :::. : ::::::: ::: . :: :. . :
CCDS74 EQTGALAGSEGTAY-SPKMEDWAGVNRTAFPAT-P-AVNGLEKPALEADIKYTQSASTLS
310 320 330 340 350
270 280 290 300 310
pF1KB7 AVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVA-GHGWQHAGGTSLSP-------HNC
:::.:. : . ::. : . .::: .::.: : : : : :.: :.
CCDS74 AVGGFLPACA---YPASNQ---HGVYSAPGGGYLAPGPPWPPAQGPPLAPPGAGVAVHGG
360 370 380 390 400 410
320 330 340
pF1KB7 DIPASLAFKGMQAAREGSHSVTASAL
.. :...::
CCDS74 ELAAAMTFKHPSREVADRKPPSSGSKAPDALSSLHGLPIPASTS
420 430 440 450
>>CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 (394 aa)
initn: 729 init1: 662 opt: 685 Z-score: 525.9 bits: 105.9 E(32554): 5.7e-23
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
CCDS41 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
CCDS41 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
CCDS41 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
CCDS41 SASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTF
180 190 200 210 220 230
>>CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 (396 aa)
initn: 690 init1: 662 opt: 685 Z-score: 525.9 bits: 105.9 E(32554): 5.7e-23
Smith-Waterman score: 685; 57.1% identity (78.5% similar) in 191 aa overlap (1-191:13-196)
10 20 30 40
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRV
:.:. : :::::::::::::::...: ::::::. :.:::::::::::
CCDS74 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLA
:::::::::.:: ::::: ::.::::::.:.:: :: .: ::...: .:::::::::::
CCDS74 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 DGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITA
.:.::. .:::::::.::.:.:. :: . . . : : .. . : :: ..
CCDS74 EGICDNDTVPSVSSINRIIRTKV----QQPFHPT-PDGAGTGVTAPGHTIVPSTASPPVS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 AAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSL
.:.. :. : .: : ...::.
CCDS74 SASNDPV--GSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTF
180 190 200 210 220 230
>>CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 (398 aa)
initn: 688 init1: 627 opt: 664 Z-score: 510.3 bits: 103.0 E(32554): 4.2e-22
Smith-Waterman score: 664; 42.2% identity (68.1% similar) in 301 aa overlap (6-297:11-305)
10 20 30 40 50
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK
: .:::::.::::::::...: :::.::. :.::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKY
::.:: ::::: ::.::::::.:.:: ::..: ::...: .:::::::::::.::::.
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPAL-PYNHIYSYPSPITAAAAKVP
.:::::::.::.:.:. . . . .. .: .: : . . :: . . ...
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 TPPGVPAIPGSVAMPRTWPSSHSVTDILGIR-SITDQVSDSSPYHSPKVEEWSSLGRNNF
. :. .: :.: . . . .: . : :: .: :.:.: . ... .:. ..
CCDS46 SINGLLGI----AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ--HHLE
190 200 210 220 230
240 250 260 270 280
pF1KB7 PAAAPHAVNGL-EKGALEQEAKYGQAPNGLPAVGSFVS--ASSMAPYPTPA--QVSPYMT
: : . : : ...: :. :: ..: .. ....: :: ..: ..:
CCDS46 PLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQT
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 YS--AAPSGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
: ::: ..
CCDS46 YPVVAAPPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPP
300 310 320 330 340 350
>>CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 (450 aa)
initn: 674 init1: 627 opt: 665 Z-score: 510.2 bits: 103.2 E(32554): 4.3e-22
Smith-Waterman score: 665; 39.8% identity (66.2% similar) in 337 aa overlap (6-332:11-338)
10 20 30 40 50
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK
: .:::::.::::::::...: :::.::. :.::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKY
::.:: ::::: ::.::::::.:.:: ::..: ::...: .:::::::::::.::::.
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPAL-PYNHIYSYPSPITAAAAKVP
.:::::::.::.:.:. . . . .. .: .: : . . :: . . ...
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 TPPGVPAIPGSVAMPRTWPSSHSVTDILGIR-SITDQVSDSSPYHSPKVEEWSSLGRNNF
. :. .: :.: . . . .: . : :: .: :.:.: . ... .:. ..
CCDS46 SINGLLGI----AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ--HHLE
190 200 210 220 230
240 250 260 270 280
pF1KB7 PAAAPHAVNGL-EKGALEQEAKYGQAPNGLPAVGSFVS--ASSMAPYPTPA--QVSPYMT
: : . : : ...: :. :: ..: .. ....: :: ..: ..:
CCDS46 PLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQT
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 YS--AAP-SGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
: : : : .. . .....: .: . .: :: .: . :
CCDS46 YPVVADPHSPFAIKQETPEVSSSSSTPSSL---SSSAFLDLQQVGSGVPPFNAFPHAASV
300 310 320 330 340 350
CCDS46 YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYS
360 370 380 390 400 410
>>CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 (287 aa)
initn: 692 init1: 633 opt: 661 Z-score: 510.2 bits: 102.6 E(32554): 4.3e-22
Smith-Waterman score: 663; 43.8% identity (62.7% similar) in 306 aa overlap (6-292:11-286)
10 20 30 40 50
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK
: .:::::.::::::::...: :::.::. :.::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKY
::.:: ::::: ::.::::::.:.:: ::..: ::...: .:::::::::::.::::.
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPT
.:::::::.::.:.:. :: :.: :. . .:
CCDS42 TVPSVSSINRIIRTKV----QQ-----------------PFNL------PMDSCVATKSL
130 140 150
180 190 200 210 220
pF1KB7 PPGVPAIPGSVAMPRTWP------SSHSVTDILGI-------RSITDQVSDSSPYHSPKV
:: ::.:.. : : :..:.. .::: :.. :. .:: :
CCDS42 SPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRL-SIDS
160 170 180 190 200 210
230 240 250 260 270
pF1KB7 EEWSSLGRNNF--PAAAPHAVNGLEKGALEQEAKYGQA-PN---GLPAVGSFVSASSMAP
. :: :... : . : .. :: .:. . : :. : :... : ::
CCDS42 QSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQEVNTL--AMPMAT
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB7 YPTPAQVSPYMTYSAAPSGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSV
::: . : . . :
CCDS42 PPTPPTARPGASPTPAC
280
>>CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 (321 aa)
initn: 694 init1: 633 opt: 658 Z-score: 507.2 bits: 102.2 E(32554): 6.2e-22
Smith-Waterman score: 660; 42.8% identity (68.3% similar) in 290 aa overlap (6-281:11-290)
10 20 30 40 50
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSK
: .:::::.::::::::...: :::.::. :.::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKY
::.:: ::::: ::.::::::.:.:: ::..: ::...: .:::::::::::.::::.
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPAL-PYNHIYSYPSPITAAAAKVP
.:::::::.::.:.:. . . . .. .: .: : . . :: . . ...
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
180 190 200 210 220
pF1KB7 TPPGVPAIPGSVAMPRTWPSSHSVTDILGIR-SITDQVSDSSPYHSPKVEEWSS------
. :. .: :.: . . . .: . : :: .: :.:.: . ... .:.
CCDS42 SINGLLGI----AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPL
190 200 210 220 230
230 240 250 260 270 280
pF1KB7 ---LGRNNFPAA--APHAVNGLEKGALEQEAKYG-QAPNGLPAVGSFVSASSMAPYPTPA
. :...: : .: ..: :.: : .: . :. :. .. ..: : :. :
CCDS42 ECPFERQHYPEAYASPSHTKG-EQG----ERWWGPRCPDTHPTSPP-ADRAAMPPLPSQA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 QVSPYMTYSAAPSGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL
CCDS42 WWQEVNTLAMPMATPPTPPTARPGASPTPAC
300 310 320
>>CCDS46522.1 PAX3 gene_id:5077|Hs108|chr2 (483 aa)
initn: 680 init1: 655 opt: 660 Z-score: 506.0 bits: 102.5 E(32554): 7.3e-22
Smith-Waterman score: 671; 39.3% identity (61.9% similar) in 349 aa overlap (6-339:36-368)
10 20 30
pF1KB7 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQL
:.::::::::.::::::: :: .:::.:.
CCDS46 GAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHH
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 GIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDP
::::: :::::::::::::::: ::.::::: :::::::::.:::: : :.:. ::...:
CCDS46 GIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 GIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPAL-
:.:.:::::.:: :.:::. .::::::::::::.:.:. .. :. . . . :
CCDS46 GMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESEKKAKH
130 140 150 160 170 180
160 170 180 190 200
pF1KB7 PYNHIYSY--PSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSIT----
. : : .: . .. . . : .: . . :: ..... .. :
CCDS46 SIDGILSERASAPQSDEGSDIDSEPDLP-LKRKQRRSRTTFTAEQLEELERAFERTHYPD
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB7 ----DQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPA
..... . .:. : : : . : ..: : :... : :...:.
CCDS46 IYTREELAQRAKLTEARVQVWFSNRRARWRKQA--GANQLM--AFNHLIPGGFPPTAMPT
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB7 VGSF-VSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHAGGTSLSPHNCDIPA---S
. .. .: .:. : : :: ::. : : : ... :. ::. :
CCDS46 LPTYQLSETSYQPTSIPQAVSD-------PSSTV--HRPQPLPPSTV--HQSTIPSNPDS
310 320 330 340
330 340
pF1KB7 LAFKGMQAAREGSHSVTASAL
. . ..:.: : : :
CCDS46 SSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDY
350 360 370 380 390 400
341 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:31:32 2016 done: Fri Nov 4 21:31:32 2016
Total Scan time: 3.030 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]