FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7669, 338 aa
  1>>>pF1KB7669 338 - 338 aa - 338 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8081+/-0.000817; mu= 0.2828+/- 0.050
 mean_var=294.1220+/-58.815, 0's: 0 Z-trim(118.8): 22  B-trim: 0 in 0/55
 Lambda= 0.074784
 statistics sampled from 19773 (19795) to 19773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.858), E-opt: 0.2 (0.608), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS12664.1 FOSB gene_id:2354|Hs108|chr19          ( 338) 2290 259.2 3.4e-69
CCDS46113.1 FOSB gene_id:2354|Hs108|chr19          ( 302) 1058 126.3 3.3e-29


>>CCDS12664.1 FOSB gene_id:2354|Hs108|chr19               (338 aa)
 initn: 2290 init1: 2290 opt: 2290  Z-score: 1355.7  bits: 259.2 E(32554): 3.4e-69
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338)

               10        20        30        40        50        60
pF1KB7 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGSFVPTVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGSFVPTVTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTSYSTPGMSGYSSGGASGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTSYSTPGMSGYSSGGASGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRNRRRELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRNRRRELT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEGPGPGPLAEVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEGPGPGPLAEVRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LPGSAPAKEDGFSWLLPPPPPPPLPFQTSQDAPPNLTASLFTHSEVQVLGDPFPVVNPSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPGSAPAKEDGFSWLLPPPPPPPLPFQTSQDAPPNLTASLFTHSEVQVLGDPFPVVNPSY
              250       260       270       280       290       300

              310       320       330        
pF1KB7 TSSFVLTCPEVSAFAGAQRTSGSDQPSDPLNSPSLLAL
       ::::::::::::::::::::::::::::::::::::::
CCDS12 TSSFVLTCPEVSAFAGAQRTSGSDQPSDPLNSPSLLAL
              310       320       330        

>>CCDS46113.1 FOSB gene_id:2354|Hs108|chr19               (302 aa)
 initn: 1163 init1: 1051 opt: 1058  Z-score: 638.0  bits: 126.3 E(32554): 3.3e-29
Smith-Waterman score: 1977; 89.3% identity (89.3% similar) in 338 aa overlap (1-338:1-302)

               10        20        30        40        50        60
pF1KB7 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGSFVPTVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MFQAFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPPTAAASQECAGLGEMPGSFVPTVTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTSYSTPGMSGYSSGGASGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ITTSQDLQWLVQPTLISSMAQSQGQPLASQPPVVDPYDMPGTSYSTPGMSGYSSGGASGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGPSTSGTTSGPGPARPARARPRRPREETLTPEEEEKRRVRRERNKLAAAKCRNRRRELT
       :::::::::::::::::::::::::::::                               
CCDS46 GGPSTSGTTSGPGPARPARARPRRPREET-------------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KB7 DRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEGPGPGPLAEVRD
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 -----ETDQLEEEKAELESEIAELQKEKERLEFVLVAHKPGCKIPYEEGPGPGPLAEVRD
          150       160       170       180       190       200    

              250       260       270       280       290       300
pF1KB7 LPGSAPAKEDGFSWLLPPPPPPPLPFQTSQDAPPNLTASLFTHSEVQVLGDPFPVVNPSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LPGSAPAKEDGFSWLLPPPPPPPLPFQTSQDAPPNLTASLFTHSEVQVLGDPFPVVNPSY
          210       220       230       240       250       260    

              310       320       330        
pF1KB7 TSSFVLTCPEVSAFAGAQRTSGSDQPSDPLNSPSLLAL
       ::::::::::::::::::::::::::::::::::::::
CCDS46 TSSFVLTCPEVSAFAGAQRTSGSDQPSDPLNSPSLLAL
          270       280       290       300  




338 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:27:45 2016 done: Fri Nov  4 21:27:46 2016
 Total Scan time:  3.020 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]