FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7664, 396 aa
  1>>>pF1KB7664 396 - 396 aa - 396 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0045+/-0.000374; mu= 7.8242+/- 0.023
 mean_var=267.2337+/-55.161, 0's: 0 Z-trim(122.9): 42  B-trim: 1765 in 2/56
 Lambda= 0.078456
 statistics sampled from 41717 (41783) to 41717 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.49), width:  16
 Scan time:  9.640

The best scores are:                                      opt bits E(85289)
NP_078976 (OMIM: 608241,614501) smad nuclear-inter ( 396) 2700 318.4 1.9e-86


>>NP_078976 (OMIM: 608241,614501) smad nuclear-interacti  (396 aa)
 initn: 2700 init1: 2700 opt: 2700  Z-score: 1673.1  bits: 318.4 E(85289): 1.9e-86
Smith-Waterman score: 2700; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB7 MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 DRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEERE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 FYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKF
              310       320       330       340       350       360

              370       380       390      
pF1KB7 GFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS
       ::::::::::::::::::::::::::::::::::::
NP_078 GFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS
              370       380       390      




396 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:14:29 2016 done: Fri Nov  4 20:14:31 2016
 Total Scan time:  9.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]