FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7664, 396 aa
  1>>>pF1KB7664 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8561+/-0.000901; mu= 8.8229+/- 0.055
 mean_var=249.2037+/-50.636, 0's: 0 Z-trim(115.1): 36  B-trim: 428 in 1/53
 Lambda= 0.081245
 statistics sampled from 15637 (15667) to 15637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.481), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS419.1 SNIP1 gene_id:79753|Hs108|chr1           ( 396) 2700 329.1 4.4e-90


>>CCDS419.1 SNIP1 gene_id:79753|Hs108|chr1                (396 aa)
 initn: 2700 init1: 2700 opt: 2700  Z-score: 1730.7  bits: 329.1 E(32554): 4.4e-90
Smith-Waterman score: 2700; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB7 MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MKAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEERE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FYNARRREHRQRNDVGGGGSESQELVPRPGGNNKEKEVPAKEKPSFELSGALLEDTNTFR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPIDHPSCS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKF
              310       320       330       340       350       360

              370       380       390      
pF1KB7 GFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS
       ::::::::::::::::::::::::::::::::::::
CCDS41 GFSSREYVLLHESSDTSEIDRKDDEDEEEEEEVSDS
              370       380       390      




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:14:28 2016 done: Fri Nov  4 20:14:29 2016
 Total Scan time:  3.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]