FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7662, 396 aa
  1>>>pF1KB7662 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6259+/-0.000769; mu= 15.5771+/- 0.046
 mean_var=73.3280+/-14.616, 0's: 0 Z-trim(109.0): 12  B-trim: 3 in 1/49
 Lambda= 0.149775
 statistics sampled from 10584 (10590) to 10584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.325), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS1627.1 TFB2M gene_id:64216|Hs108|chr1          ( 396) 2715 595.7 2.4e-170


>>CCDS1627.1 TFB2M gene_id:64216|Hs108|chr1               (396 aa)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 3171.8  bits: 595.7 E(32554): 2.4e-170
Smith-Waterman score: 2715; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB7 MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 MIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDE
              310       320       330       340       350       360

              370       380       390      
pF1KB7 KVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR
       ::::::::::::::::::::::::::::::::::::
CCDS16 KVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR
              370       380       390      




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:04:10 2016 done: Sat Nov  5 10:04:10 2016
 Total Scan time:  2.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]