Result of FASTA (ccds) for
pF1KB7628
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7628, 373 aa
1>>>pF1KB7628 373 - 373 aa - 373 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8649+/-0.000733; mu= 7.5956+/- 0.045
mean_var=180.0620+/-37.154, 0's: 0 Z-trim(116.1): 12 B-trim: 0 in 0/52
Lambda= 0.095579
statistics sampled from 16664 (16675) to 16664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.512), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS6442.1 DMRT1 gene_id:1761|Hs108|chr9 ( 373) 2563 364.8 6.8e-101
CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1 ( 542) 436 71.7 1.8e-12
CCDS6514.1 DMRTA1 gene_id:63951|Hs108|chr9 ( 504) 435 71.5 1.8e-12
CCDS6445.1 DMRT2 gene_id:10655|Hs108|chr9 ( 226) 416 68.6 6.1e-12
CCDS6444.1 DMRT2 gene_id:10655|Hs108|chr9 ( 561) 416 68.9 1.2e-11
>>CCDS6442.1 DMRT1 gene_id:1761|Hs108|chr9 (373 aa)
initn: 2563 init1: 2563 opt: 2563 Z-score: 1924.9 bits: 364.8 E(32554): 6.8e-101
Smith-Waterman score: 2563; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB7 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGKASGALVGAASGSSAGGSSRGGGSGSGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGKASGALVGAASGSSAGGSSRGGGSGSGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNPCLMTECSGTSQPPPASVPTTAASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNPCLMTECSGTSQPPPASVPTTAASE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQPSLFPYYNNLYNCPQYSMALAADSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQPSLFPYYNNLYNCPQYSMALAADSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SGEVGNPLGGSPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQYRMHSYYPPPSYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SGEVGNPLGGSPVKNSLRGLPGPYVPGQTGNQWQMKNMENRHAMSSQYRMHSYYPPPSYL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 GQSVPQFFTFEDAPSYPEARASVFSPPSSQDSGLVSLSSSSPISNKSTKAVLECEPASEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQSVPQFFTFEDAPSYPEARASVFSPPSSQDSGLVSLSSSSPISNKSTKAVLECEPASEP
310 320 330 340 350 360
370
pF1KB7 SSFTVTPVIEEDE
:::::::::::::
CCDS64 SSFTVTPVIEEDE
370
>>CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1 (542 aa)
initn: 436 init1: 393 opt: 436 Z-score: 337.6 bits: 71.7 E(32554): 1.8e-12
Smith-Waterman score: 439; 34.5% identity (58.2% similar) in 275 aa overlap (14-272:5-275)
10 20 30 40 50
pF1KB7 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGKASGALVGAASGSSAGGS---SRGGGSG
:: : .::. . : . : ......:....:..: : .::
CCDS44 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLL
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 SGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAA
: : ...: :: :::::::::: .: ::::::.: :.:: : ::.:::::::::::
CCDS44 RGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 QVALRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNP------CLMTECSGTSQPPPA
::::::::::::. . . : ..:: :. :: : . . :.. . : :
CCDS44 QVALRRQQAQEENEARELQL-LYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 SVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQPSLFPYYNNLYNC-PQ
..: :. : . . .. . . : . .. .: : . : . . :
CCDS44 GAP---AGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPG
180 190 200 210 220
240 250 260 270 280
pF1KB7 YSMALAADSASGEVGN--PLGGSPV----KNSLRGLPGPYVPGQTGNQWQMKNMENRHAM
: . ....: :. ..:::. :.. . :: :: :..
CCDS44 TSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSE
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB7 SSQYRMHSYYPPPSYLGQSVPQFFTFEDAPSYPEARASVFSPPSSQDSGLVSLSSSSPIS
CCDS44 SGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAI
290 300 310 320 330 340
>>CCDS6514.1 DMRTA1 gene_id:63951|Hs108|chr9 (504 aa)
initn: 442 init1: 407 opt: 435 Z-score: 337.3 bits: 71.5 E(32554): 1.8e-12
Smith-Waterman score: 435; 57.9% identity (72.2% similar) in 126 aa overlap (10-129:28-150)
10 20 30
pF1KB7 MPNDEAFSKPSTPSEAPHAPG---VPPQG-RAGG-FGKASGA
: :: : .:. ::: : . : .:..:
CCDS65 MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAA
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 LVGAASGSS-AGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKRFCM
..::...: .:: . : ::.. .: : :: :::::::::: .: ::::::::
CCDS65 AAAAAAATSGSGGCPPAPGLESGVGAVGCG---YPRTPKCARCRNHGVVSALKGHKRFCR
70 80 90 100 110
100 110 120 130 140 150
pF1KB7 WRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNGSNP
:::: : ::.:::::::::::::::::::::::
CCDS65 WRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSGLSWPPGGRASGGGG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB7 CLMTECSGTSQPPPASVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSFYQP
CCDS65 RAENPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQE
180 190 200 210 220 230
>>CCDS6445.1 DMRT2 gene_id:10655|Hs108|chr9 (226 aa)
initn: 433 init1: 371 opt: 416 Z-score: 327.8 bits: 68.6 E(32554): 6.1e-12
Smith-Waterman score: 416; 50.4% identity (65.6% similar) in 131 aa overlap (4-134:56-181)
10 20 30
pF1KB7 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGK
:: . . :: .::.: : . : .
CCDS64 VCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQ
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 ASGALVGAASGSSAGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKR
:. :: ...: : .:.:: .: : :::::::::: .: ::::::
CCDS64 PRPPLAPQASPAGTGPRERCTPAGGGAEP-----RKLSRTPKCARCRNHGVVSCLKGHKR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 FCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNG
:: :::::: .: :..::::::::::::::::: :.. :.:
CCDS64 FCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB7 SNPCLMTECSGTSQPPPASVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSF
CCDS64 SLLAKSILEVLLGLFYSYYVYIMNHL
210 220
>>CCDS6444.1 DMRT2 gene_id:10655|Hs108|chr9 (561 aa)
initn: 402 init1: 371 opt: 416 Z-score: 322.5 bits: 68.9 E(32554): 1.2e-11
Smith-Waterman score: 416; 50.4% identity (65.6% similar) in 131 aa overlap (4-134:56-181)
10 20 30
pF1KB7 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGK
:: . . :: .::.: : . : .
CCDS64 VCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQ
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB7 ASGALVGAASGSSAGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKR
:. :: ...: : .:.:: .: : :::::::::: .: ::::::
CCDS64 PRPPLAPQASPAGTGPRERCTPAGGGAEP-----RKLSRTPKCARCRNHGVVSCLKGHKR
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB7 FCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNG
:: :::::: .: :..::::::::::::::::: :.. :.:
CCDS64 FCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAP
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB7 SNPCLMTECSGTSQPPPASVPTTAASEGRMVIQDIPAVTSRGHVENTPDLVSDSTYYSSF
CCDS64 SLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAFADKELENIMLEREYKEREML
210 220 230 240 250 260
373 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:03:43 2016 done: Fri Nov 4 09:03:43 2016
Total Scan time: 2.830 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]