FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7624, 368 aa
  1>>>pF1KB7624 368 - 368 aa - 368 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1786+/-0.000454; mu= 7.8461+/- 0.028
 mean_var=123.4668+/-24.284, 0's: 0 Z-trim(114.0): 23  B-trim: 18 in 1/50
 Lambda= 0.115425
 statistics sampled from 23580 (23581) to 23580 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.276), width:  16
 Scan time:  8.430

The best scores are:                                      opt bits E(85289)
NP_003073 (OMIM: 600591) snRNA-activating protein  ( 368) 2429 415.8 7.6e-116


>>NP_003073 (OMIM: 600591) snRNA-activating protein comp  (368 aa)
 initn: 2429 init1: 2429 opt: 2429  Z-score: 2200.8  bits: 415.8 E(85289): 7.6e-116
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB7 MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCGRMRNLEKNMFTKEALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCGRMRNLEKNMFTKEALA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVLKFQQDLVNAQHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVLKFQQDLVNAQHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEEFKDPSDRVMKLITSDVLEEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEEFKDPSDRVMKLITSDVLEEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKNIVLEHQQWHKDRKNPSLKSKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKNIVLEHQQWHKDRKNPSLKSKTN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQASKSRRHRQVKLDSSDSDSASGQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQASKSRRHRQVKLDSSDSDSASGQGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKEDKPLSLSMPVITEEEENESLSGTEFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKEDKPLSLSMPVITEEEENESLSGTEFT
              310       320       330       340       350       360

               
pF1KB7 ASKKRRKH
       ::::::::
NP_003 ASKKRRKH
               




368 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:01:36 2016 done: Fri Nov  4 09:01:37 2016
 Total Scan time:  8.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]