FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7624, 368 aa
  1>>>pF1KB7624 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7266+/-0.00106; mu= 10.2988+/- 0.064
 mean_var=116.0905+/-22.494, 0's: 0 Z-trim(106.7): 12  B-trim: 2 in 1/49
 Lambda= 0.119035
 statistics sampled from 9123 (9126) to 9123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS9755.1 SNAPC1 gene_id:6617|Hs108|chr14         ( 368) 2429 428.3 5.3e-120


>>CCDS9755.1 SNAPC1 gene_id:6617|Hs108|chr14              (368 aa)
 initn: 2429 init1: 2429 opt: 2429  Z-score: 2267.9  bits: 428.3 E(32554): 5.3e-120
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB7 MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCGRMRNLEKNMFTKEALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MGTPPGLQTDCEALLSRFQETDSVRFEDFTELWRNMKFGTIFCGRMRNLEKNMFTKEALA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVLKFQQDLVNAQHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LAWRYFLPPYTFQIRVGALYLLYGLYNTQLCQPKQKIRVALKDWDEVLKFQQDLVNAQHF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEEFKDPSDRVMKLITSDVLEEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DAAYIFRKLRLDRAFHFTAMPKLLSYRMKKKIHRAEVTEEFKDPSDRVMKLITSDVLEEM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKNIVLEHQQWHKDRKNPSLKSKTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LNVHDHYQNMKHVISVDKSKPDKALSLIKDDFFDNIKNIVLEHQQWHKDRKNPSLKSKTN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQASKSRRHRQVKLDSSDSDSASGQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 DGEEKMEGNSQETERCERAESLAKIKSKAFSVVIQASKSRRHRQVKLDSSDSDSASGQGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKEDKPLSLSMPVITEEEENESLSGTEFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VKATRKKEKKERLKPAGRKMSLRNKGNVQNIHKEDKPLSLSMPVITEEEENESLSGTEFT
              310       320       330       340       350       360

               
pF1KB7 ASKKRRKH
       ::::::::
CCDS97 ASKKRRKH
               




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:01:35 2016 done: Fri Nov  4 09:01:35 2016
 Total Scan time:  2.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]