FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7618, 362 aa
  1>>>pF1KB7618 362 - 362 aa - 362 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7998+/-0.000963; mu= -6.5716+/- 0.057
 mean_var=425.1113+/-92.926, 0's: 0 Z-trim(117.7): 659  B-trim: 0 in 0/51
 Lambda= 0.062205
 statistics sampled from 17658 (18462) to 17658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.567), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS12285.1 KLF1 gene_id:10661|Hs108|chr19         ( 362) 2595 246.4 2.8e-65
CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19         ( 355)  708 77.1 2.7e-14
CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9            ( 479)  684 75.0 1.4e-13


>>CCDS12285.1 KLF1 gene_id:10661|Hs108|chr19              (362 aa)
 initn: 2595 init1: 2595 opt: 2595  Z-score: 1285.3  bits: 246.4 E(32554): 2.8e-65
Smith-Waterman score: 2595; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KB7 MATAETALPSISTLTALGPFPDTQDDFLKWWRSEEAQDMGPGPPDPTEPPLHVKSEDQPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATAETALPSISTLTALGPFPDTQDDFLKWWRSEEAQDMGPGPPDPTEPPLHVKSEDQPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEEDDERGADATWDLDLLLTNFSGPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEEDDERGADATWDLDLLLTNFSGPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GLVAGLLGSEDHSGWVRPALRARAPDAFVGPALAPAPAPEPKALALQPVYPGPGAGSSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GLVAGLLGSEDHSGWVRPALRARAPDAFVGPALAPAPAPEPKALALQPVYPGPGAGSSGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YFPRTGLSVPAASGAPYGLLSGYPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YFPRTGLSVPAASGAPYGLLSGYPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PGTVGTGLGGTAEDPGVIAETAPSKRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGTVGTGLGGTAEDPGVIAETAPSKRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RTHTGEKPYACTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RTHTGEKPYACTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKR
              310       320       330       340       350       360

         
pF1KB7 HL
       ::
CCDS12 HL
         

>>CCDS12343.1 KLF2 gene_id:10365|Hs108|chr19              (355 aa)
 initn: 779 init1: 639 opt: 708  Z-score: 370.2  bits: 77.1 E(32554): 2.7e-14
Smith-Waterman score: 778; 42.9% identity (58.6% similar) in 326 aa overlap (38-362:59-355)

        10        20        30        40        50        60       
pF1KB7 LPSISTLTALGPFPDTQDDFLKWWRSEEAQDMGPGPPDPTEPPLHVKSEDQPGEEEDDER
                                     . .: :: :  ::     :  ::       
CCDS12 RAEPESGGTDDDLNSVLDFILSMGLDGLGAEAAPEPPPPPPPPAFYYPE--PGAPPPYSA
       30        40        50        60        70          80      

        70        80        90       100       110       120       
pF1KB7 GADATWDLDLLLTNFSGPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGPGLVAGLL
        : .  . .::  ....:   .      :::        ::  .  :.:. .:::. :  
CCDS12 PAGGLVS-ELLRPELDAPLGPALHGRFLLAPPGRLVKAEPPEADGGGGYGCAPGLTRG--
         90        100       110       120       130       140     

       130       140       150       160       170        180      
pF1KB7 GSEDHSGWVRPALRARAPDAFVGPALAPAPAPEPKALALQPVYP-GPGAGSSGGYFPRTG
             :  : .  . : . . ::.  : : :.       :. : ::.   . :  ::. 
CCDS12 ----PRGLKREGAPGPAASCMRGPGGRPPPPPDTP-----PLSPDGPARLPAPG--PRA-
               150       160       170            180         190  

        190       200       210       220       230       240      
pF1KB7 LSVPAASGAPYGLLSGYPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLGPGTVGT
        : :   :.: :. .  :... ::     : ::    . : . . .:       :..   
CCDS12 -SFPPPFGGP-GFGAPGPGLHYAPPAPPAFGLFDDAAAAAAALGLAP-------PAA--R
              200        210       220       230                240

        250       260       270       280       290       300      
pF1KB7 GLGGTAEDPGVIAETAPSKRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHLRTHTGE
       ::     .:  . :. : ::::::: ::: :.:::.. ::::.:::::::::::::::::
CCDS12 GLLTPPASPLELLEAKP-KRGRRSWPRKRTATHTCSYAGCGKTYTKSSHLKAHLRTHTGE
              250        260       270       280       290         

        310       320       330       340       350       360  
pF1KB7 KPYACTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKRHL
       ::: :.:.::::.::::::::::::::::.:::.:.:: ::::::::::::::::.
CCDS12 KPYHCNWDGCGWKFARSDELTRHYRKHTGHRPFQCHLCDRAFSRSDHLALHMKRHM
     300       310       320       330       340       350     

>>CCDS6770.2 KLF4 gene_id:9314|Hs108|chr9                 (479 aa)
 initn: 815 init1: 633 opt: 684  Z-score: 357.0  bits: 75.0 E(32554): 1.4e-13
Smith-Waterman score: 687; 48.1% identity (61.8% similar) in 262 aa overlap (114-362:239-479)

            90       100       110       120       130       140   
pF1KB7 GPEPGGAPQTCALAPSEASGAQYPPPPETLGAYAGGPGLVAGLLGSEDHSGWVRPALRAR
                                     :.  :.:....   :: : :   .:.. : 
CCDS67 DPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGS---HPVVVA-
      210       220       230       240       250          260     

           150       160        170       180            190       
pF1KB7 APDAFVGPALAPAPAPEPKALALQP-VYPGPGAGSSGGYFPRT-----GLSVPAASGAPY
        :    ::   :   :. :  :..  .. : :   :.:. : .     : ..:. .    
CCDS67 -PYNG-GP---PRTCPKIKQEAVSSCTHLGAGPPLSNGHRPAAHDFPLGRQLPSRTTPTL
            270          280       290       300       310         

          200          210       220       230       240       250 
pF1KB7 GL---LSG---YPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLGPGTVGTGLGGT
       ::   ::.   .::. : :          :.. : ::: . ::::       :       
CCDS67 GLEEVLSSRDCHPAL-PLPP---------GFH-PHPGP-NYPSFLPDQMQPQVPPLHYQE
     320       330                 340         350       360       

             260        270       280       290       300       310
pF1KB7 AEDPGVIAETAPS-KRGRRSWARKRQAAHTCAHPGCGKSYTKSSHLKAHLRTHTGEKPYA
          ::      :. ::::::: ::: :.::: . ::::.:::::::::::::::::::: 
CCDS67 LMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYH
       370       380       390       400       410       420       

              320       330       340       350       360  
pF1KB7 CTWEGCGWRFARSDELTRHYRKHTGQRPFRCQLCPRAFSRSDHLALHMKRHL
       : :.::::.::::::::::::::::.:::.:: : ::::::::::::::::.
CCDS67 CDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF
       430       440       450       460       470         




362 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:20:31 2016 done: Fri Nov  4 21:20:32 2016
 Total Scan time:  3.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]