Result of FASTA (omim) for
pF1KB7617
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7617, 307 aa
1>>>pF1KB7617 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2535+/-0.000484; mu= 6.5688+/- 0.030
mean_var=128.0623+/-25.314, 0's: 0 Z-trim(111.9): 11 B-trim: 96 in 2/54
Lambda= 0.113335
statistics sampled from 20644 (20652) to 20644 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.242), width: 16
Scan time: 4.950
The best scores are: opt bits E(85289)
XP_016860736 (OMIM: 603525) PREDICTED: N-myc-inter ( 307) 1967 333.2 4.1e-91
XP_005246998 (OMIM: 603525) PREDICTED: N-myc-inter ( 307) 1967 333.2 4.1e-91
NP_004679 (OMIM: 603525) N-myc-interactor [Homo sa ( 307) 1967 333.2 4.1e-91
NP_001317159 (OMIM: 600735) interferon-induced 35 ( 286) 390 75.3 1.6e-13
XP_016880074 (OMIM: 600735) PREDICTED: interferon- ( 266) 388 74.9 1.9e-13
NP_005524 (OMIM: 600735) interferon-induced 35 kDa ( 288) 388 75.0 2.1e-13
XP_016880073 (OMIM: 600735) PREDICTED: interferon- ( 268) 386 74.6 2.4e-13
>>XP_016860736 (OMIM: 603525) PREDICTED: N-myc-interacto (307 aa)
initn: 1967 init1: 1967 opt: 1967 Z-score: 1756.7 bits: 333.2 E(85289): 4.1e-91
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
250 260 270 280 290 300
pF1KB7 HIAYFEE
:::::::
XP_016 HIAYFEE
>>XP_005246998 (OMIM: 603525) PREDICTED: N-myc-interacto (307 aa)
initn: 1967 init1: 1967 opt: 1967 Z-score: 1756.7 bits: 333.2 E(85289): 4.1e-91
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
250 260 270 280 290 300
pF1KB7 HIAYFEE
:::::::
XP_005 HIAYFEE
>>NP_004679 (OMIM: 603525) N-myc-interactor [Homo sapien (307 aa)
initn: 1967 init1: 1967 opt: 1967 Z-score: 1756.7 bits: 333.2 E(85289): 4.1e-91
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
250 260 270 280 290 300
pF1KB7 HIAYFEE
:::::::
NP_004 HIAYFEE
>>NP_001317159 (OMIM: 600735) interferon-induced 35 kDa (286 aa)
initn: 249 init1: 193 opt: 390 Z-score: 363.6 bits: 75.3 E(85289): 1.6e-13
Smith-Waterman score: 390; 29.2% identity (64.2% similar) in 288 aa overlap (23-305:6-281)
10 20 30 40 50 60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
: ..: .: .. ...: ..:.:. :: .. :. ..
NP_001 MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
10 20 30 40
70 80 90 100 110 120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
..:. . : . . .: .. :. . .. . :.:::::. .::..:..
NP_001 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
50 60 70 80 90
130 140 150 160 170
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDKLE
...: ..... :.: ..:. : . .:. ..: .. :: .: .:: :... ::::
NP_001 QKEHTINMEECRLRVQVQPLELPMVTTIQMSSQLSGRRVLVTGFPASLRLSEEELLDKLE
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 LSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVTVS
. :.:.:::::.:: . ::... :.. :::... . .. :: .:. : ::
NP_001 IFFGKTRNGGGDVDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--VS
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 PYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKC-
::.. ...: .: : :.::. .. : .: ..:...::::. :::::...
NP_001 PYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALTVV
220 230 240 250 260 270
300
pF1KB7 SLGQPHIAYFEE
:: .: :
NP_001 PQGQQGLAVFTSESG
280
>>XP_016880074 (OMIM: 600735) PREDICTED: interferon-indu (266 aa)
initn: 249 init1: 193 opt: 388 Z-score: 362.3 bits: 74.9 E(85289): 1.9e-13
Smith-Waterman score: 388; 29.9% identity (64.6% similar) in 268 aa overlap (43-305:5-261)
20 30 40 50 60 70
pF1KB7 KEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQIKEDIPETKMKFL
..:.:. :: .. :. .. ..:. . :
XP_016 MRLWDLQQLRKELGDSPKD-KVPFSVPKIPLVFR
10 20 30
80 90 100 110 120 130
pF1KB7 SVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVSMSKHHVQIKDVN
. . .: .. :. . .. . :.:::::. .::..:.....: .....
XP_016 G-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECR
40 50 60 70 80
140 150 160 170 180 190
pF1KB7 LEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDKLELSFSKSRNGGGE
:.: ..:. : . .:. ..: .. :: .: .:: :... ::::. :.:.:::::.
XP_016 LRVQVQPLELPMVTTIQMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGD
90 100 110 120 130 140
200 210 220 230 240
pF1KB7 VDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVTVSPYTEIHLKKYQI
:: . ::... :.. :::... . .. :: .:. : ::::.. ...: .:
XP_016 VDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--VSPYVNGEIQKAEI
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 FSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKC-SLGQPHIAYFEE
: :.::. .. : .: ..:...::::. :::::... :: .: :
XP_016 RSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTS
210 220 230 240 250 260
XP_016 ESG
>>NP_005524 (OMIM: 600735) interferon-induced 35 kDa pro (288 aa)
initn: 240 init1: 113 opt: 388 Z-score: 361.8 bits: 75.0 E(85289): 2.1e-13
Smith-Waterman score: 388; 28.6% identity (64.5% similar) in 290 aa overlap (23-305:6-283)
10 20 30 40 50 60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
: ..: .: .. ...: ..:.:. :: .. :. ..
NP_005 MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
10 20 30 40
70 80 90 100 110 120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
..:. . : . . .: .. :. . .. . :.:::::. .::..:..
NP_005 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
50 60 70 80 90
130 140 150 160 170
pF1KB7 MSKHHVQIKDVNLEVTAKPV--PLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
...: ..... :.: ..:. :. . .. .. ..: .. :: .: .:: :... ::
NP_005 QKEHTINMEECRLRVQVQPLELPMVTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDK
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB7 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
::. :.:.:::::.:: . ::... :.. :::... . .. :: .:. :
NP_005 LEIFFGKTRNGGGDVDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
::::.. ...: .: : :.::. .. : .: ..:...::::. :::::...
NP_005 VSPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
220 230 240 250 260 270
300
pF1KB7 C-SLGQPHIAYFEE
:: .: :
NP_005 VVPQGQQGLAVFTSESG
280
>>XP_016880073 (OMIM: 600735) PREDICTED: interferon-indu (268 aa)
initn: 240 init1: 113 opt: 386 Z-score: 360.5 bits: 74.6 E(85289): 2.4e-13
Smith-Waterman score: 386; 29.3% identity (64.8% similar) in 270 aa overlap (43-305:5-263)
20 30 40 50 60 70
pF1KB7 KEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQIKEDIPETKMKFL
..:.:. :: .. :. .. ..:. . :
XP_016 MRLWDLQQLRKELGDSPKD-KVPFSVPKIPLVFR
10 20 30
80 90 100 110 120 130
pF1KB7 SVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVSMSKHHVQIKDVN
. . .: .. :. . .. . :.:::::. .::..:.....: .....
XP_016 G-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECR
40 50 60 70 80
140 150 160 170 180
pF1KB7 LEVTAKPV--PLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDKLELSFSKSRNGG
:.: ..:. :. . .. .. ..: .. :: .: .:: :... ::::. :.:.::::
XP_016 LRVQVQPLELPMVTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGG
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB7 GEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVTVSPYTEIHLKKY
:.:: . ::... :.. :::... . .. :: .:. : ::::.. ...:
XP_016 GDVDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--VSPYVNGEIQKA
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 QIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKC-SLGQPHIAYF
.: : :.::. .. : .: ..:...::::. :::::... :: .: :
XP_016 EIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVF
210 220 230 240 250 260
pF1KB7 EE
XP_016 TSESG
307 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:56:28 2016 done: Sat Nov 5 18:56:28 2016
Total Scan time: 4.950 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]