FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7617, 307 aa
  1>>>pF1KB7617 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1410+/-0.00118; mu= 7.4372+/- 0.071
 mean_var=115.3238+/-22.566, 0's: 0 Z-trim(104.4): 30  B-trim: 12 in 1/52
 Lambda= 0.119430
 statistics sampled from 7885 (7890) to 7885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS2192.1 NMI gene_id:9111|Hs108|chr2             ( 307) 1967 350.0 1.3e-96
CCDS82134.1 IFI35 gene_id:3430|Hs108|chr17         ( 286)  390 78.3 7.9e-15
CCDS11450.1 IFI35 gene_id:3430|Hs108|chr17         ( 288)  388 77.9   1e-14


>>CCDS2192.1 NMI gene_id:9111|Hs108|chr2                  (307 aa)
 initn: 1967 init1: 1967 opt: 1967  Z-score: 1847.7  bits: 350.0 E(32554): 1.3e-96
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 IHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKCSLGQP
              250       260       270       280       290       300

              
pF1KB7 HIAYFEE
       :::::::
CCDS21 HIAYFEE
              

>>CCDS82134.1 IFI35 gene_id:3430|Hs108|chr17              (286 aa)
 initn: 249 init1: 193 opt: 390  Z-score: 379.7  bits: 78.3 E(32554): 7.9e-15
Smith-Waterman score: 390; 29.2% identity (64.2% similar) in 288 aa overlap (23-305:6-281)

               10        20        30        40        50        60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
CCDS82                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                                10        20         30         40 

               70        80        90       100       110       120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
CCDS82 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
              50             60        70        80        90      

              130       140       150       160         170        
pF1KB7 MSKHHVQIKDVNLEVTAKPVPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDKLE
       ...: .....  :.: ..:. :   . .:.  ..:  .. :: .: .::  :... ::::
CCDS82 QKEHTINMEECRLRVQVQPLELPMVTTIQMSSQLSGRRVLVTGFPASLRLSEEELLDKLE
        100       110       120       130       140       150      

      180       190       200       210       220         230      
pF1KB7 LSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVTVS
       . :.:.:::::.::    .   ::... :.. :::... .  ..  ::  .:.  :  ::
CCDS82 IFFGKTRNGGGDVDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--VS
        160       170         180       190       200       210    

        240       250       260       270       280       290      
pF1KB7 PYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVKC-
       ::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::...   
CCDS82 PYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALTVV
            220       230       240        250       260       270 

         300          
pF1KB7 SLGQPHIAYFEE   
         ::  .: :     
CCDS82 PQGQQGLAVFTSESG
             280      

>>CCDS11450.1 IFI35 gene_id:3430|Hs108|chr17              (288 aa)
 initn: 240 init1: 113 opt: 388  Z-score: 377.8  bits: 77.9 E(32554): 1e-14
Smith-Waterman score: 388; 28.6% identity (64.5% similar) in 290 aa overlap (23-305:6-283)

               10        20        30        40        50        60
pF1KB7 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
CCDS11                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                                10        20         30         40 

               70        80        90       100       110       120
pF1KB7 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
CCDS11 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
              50             60        70        80        90      

              130       140         150       160         170      
pF1KB7 MSKHHVQIKDVNLEVTAKPV--PLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
       ...: .....  :.: ..:.  :. . .. ..  ..:  .. :: .: .::  :... ::
CCDS11 QKEHTINMEECRLRVQVQPLELPMVTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDK
        100       110       120       130       140       150      

        180       190       200       210       220         230    
pF1KB7 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
       ::. :.:.:::::.::    .   ::... :.. :::... .  ..  ::  .:.  :  
CCDS11 LEIFFGKTRNGGGDVDV--RELLPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLR--
        160       170         180       190       200       210    

          240       250       260       270       280       290    
pF1KB7 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
       ::::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::... 
CCDS11 VSPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
            220       230       240        250       260       270 

           300          
pF1KB7 C-SLGQPHIAYFEE   
           ::  .: :     
CCDS11 VVPQGQQGLAVFTSESG
             280        




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:56:27 2016 done: Sat Nov  5 18:56:27 2016
 Total Scan time:  2.150 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]