Result of FASTA (omim) for
pF1KB7615
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7615, 304 aa
1>>>pF1KB7615 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1496+/-0.000371; mu= 4.6594+/- 0.023
mean_var=217.5439+/-44.469, 0's: 0 Z-trim(121.5): 280 B-trim: 417 in 2/52
Lambda= 0.086956
statistics sampled from 37922 (38247) to 37922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.448), width: 16
Scan time: 8.790
The best scores are: opt bits E(85289)
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 2101 275.6 8.4e-74
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 525 77.8 2.4e-14
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139) 519 76.8 2.7e-14
XP_011523120 (OMIM: 214300,600147) PREDICTED: home ( 227) 391 61.0 2.6e-09
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 335 54.0 3.8e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 314 51.6 3.4e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 314 51.6 3.4e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 314 51.6 3.4e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 314 51.6 3.4e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 314 51.6 3.4e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 314 51.6 3.4e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 314 51.6 3.4e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 309 50.8 3.6e-06
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 309 50.8 3.6e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 307 50.4 3.7e-06
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 306 50.4 4.6e-06
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 291 48.5 1.7e-05
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 279 46.9 3.8e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 283 47.7 4.9e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 283 47.7 4.9e-05
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 276 46.6 6.5e-05
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 276 46.6 6.5e-05
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 270 45.9 0.00012
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 271 46.2 0.00013
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 270 46.1 0.00015
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 266 45.4 0.00015
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 266 45.4 0.00015
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 267 45.6 0.00017
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 262 44.8 0.0002
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 262 44.8 0.0002
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 262 44.9 0.00024
NP_005184 (OMIM: 300025) homeobox protein CDX-4 [H ( 284) 260 44.6 0.00027
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 257 44.1 0.00027
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 257 44.1 0.00027
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 257 44.3 0.00037
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 257 44.3 0.00039
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 255 44.0 0.00041
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 257 44.4 0.00041
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 256 44.2 0.00042
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 252 43.6 0.00048
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 256 44.3 0.00051
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 253 43.9 0.00058
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 253 43.9 0.00058
NP_001980 (OMIM: 142996) homeobox even-skipped hom ( 407) 254 44.0 0.00058
>>NP_005915 (OMIM: 600535) homeobox protein MOX-2 [Homo (304 aa)
initn: 2101 init1: 2101 opt: 2101 Z-score: 1446.0 bits: 275.6 E(85289): 8.4e-74
Smith-Waterman score: 2101; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)
10 20 30 40 50 60
pF1KB7 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE
250 260 270 280 290 300
pF1KB7 HAHL
::::
NP_005 HAHL
>>NP_004518 (OMIM: 214300,600147) homeobox protein MOX-1 (254 aa)
initn: 629 init1: 487 opt: 525 Z-score: 378.4 bits: 77.8 E(85289): 2.4e-14
Smith-Waterman score: 624; 47.8% identity (64.3% similar) in 255 aa overlap (4-249:17-233)
10 20 30
pF1KB7 MEHPLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YP
:..::::.::. :.:: . . ...: . : .. ::
NP_004 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 ELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSS
..:.: . . :.:: .:. :: :. :::.:
NP_004 DFSASCLAATPHSLPQEEHIFTEQHPA-------------FPQSP------NWHFPV---
70 80 90
100 110 120 130 140 150
pF1KB7 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAE
: ::. .:.:: : ::. ..:::: ::. ::: :: . . :
NP_004 --SDARR----RPNSG--PAGGSKE----MGTSSLGLVDTTGG---PGDDYGVLGSTANE
100 110 120 130 140
160 170 180 190 200 210
pF1KB7 AEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRY
.::.:. .:: .:::.::. : : .:: :::::::::::.:::::::::::::::::::
NP_004 TEKKSSRRRK-ESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRY
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB7 EIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAA
::::::::.::::::::::::::::::::::
NP_004 EIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
210 220 230 240 250
280 290 300
pF1KB7 TLQQTGDSIANEDSHDSDHSSEHAHL
>>NP_001035091 (OMIM: 214300,600147) homeobox protein MO (139 aa)
initn: 520 init1: 487 opt: 519 Z-score: 377.7 bits: 76.8 E(85289): 2.7e-14
Smith-Waterman score: 519; 70.8% identity (84.2% similar) in 120 aa overlap (131-249:3-118)
110 120 130 140 150
pF1KB7 PSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAEA
.:::: :: .::: :: . . :.
NP_001 MGTSSLGLVDTTG---GPGDDYGVLGSTANET
10 20
160 170 180 190 200 210
pF1KB7 EKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYE
::.:. .:...:::.::. : : .:: :::::::::::.::::::::::::::::::::
NP_001 EKKSS-RRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYE
30 40 50 60 70 80
220 230 240 250 260 270
pF1KB7 IAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAAT
:::::::.::::::::::::::::::::::
NP_001 IAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE
90 100 110 120 130
>>XP_011523120 (OMIM: 214300,600147) PREDICTED: homeobox (227 aa)
initn: 561 init1: 353 opt: 391 Z-score: 288.2 bits: 61.0 E(85289): 2.6e-09
Smith-Waterman score: 490; 42.9% identity (62.2% similar) in 238 aa overlap (4-232:17-216)
10 20 30
pF1KB7 MEHPLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YP
:..::::.::. :.:: . . ...: . : .. ::
XP_011 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 ELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSS
..:.: . . :.:: .:. :: . . :::.:
XP_011 DFSASCLAATPHSLPQEEHIFTEQHPAFPQ-------------------SPNWHFPV---
70 80 90
100 110 120 130 140 150
pF1KB7 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAE
: ::. .:.:: : ::. ..:::: ::. ::: :: . . :
XP_011 --SDARR----RPNSG--PAGGSKE----MGTSSLGLVDTTGG---PGDDYGVLGSTANE
100 110 120 130 140
160 170 180 190 200 210
pF1KB7 AEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRY
.::.:. .:...:::.::. : : .:: :::::::::::.:::::::::::::::::::
XP_011 TEKKSS-RRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRY
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB7 EIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAA
::::::::.::::.
XP_011 EIAVNLDLSERQVRPRSKCGSRTEG
210 220
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 550 init1: 242 opt: 335 Z-score: 249.2 bits: 54.0 E(85289): 3.8e-07
Smith-Waterman score: 335; 33.2% identity (55.6% similar) in 241 aa overlap (18-245:36-264)
10 20 30 40
pF1KB7 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSS
: : . ..:: .: .. : .:..
NP_689 ALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLA-----EHPDFSPCSFQSKA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 CIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHS
.... : ... . .:::::: . : : : . . . :. . :
NP_689 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
70 80 90 100 110 120
110 120 130 140 150
pF1KB7 LCLQPDS---GGPPELGSSP----PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----AL
. :.: : :: :. :.: ... :: : ::. : : .: :.
NP_689 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSL-----TDYACGSPPVDREKQPSEGAF
130 140 150 160 170
160 170 180 190 200 210
pF1KB7 SPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTR
: .::..::: . . .. .:. .. ::.: .::.: ::: :: . ::::
NP_689 SENNAENESGGDKPPIDPNNPAANWLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTR
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 LRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSG
::::.: :.:::::::.:::::::: :..
NP_689 DRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
240 250 260 270
280 290 300
pF1KB7 IGAATLQQTGDSIANEDSHDSDHSSEHAHL
>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 316 init1: 224 opt: 314 Z-score: 232.3 bits: 51.6 E(85289): 3.4e-06
Smith-Waterman score: 314; 38.3% identity (63.0% similar) in 162 aa overlap (95-249:99-253)
70 80 90 100 110 120
pF1KB7 HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP
: .::. : . : .. :: ..::
XP_005 EACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTP-AAPPPPSSASP
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PVLCSNSSSLGSSTPTGAACAP----GDYGRQALSPAEAEKRSGGKRKSDSSDSQE---G
: ::. ::..:: .: ..: . : :.:.. :.:..::.: : :
XP_005 PQNASNNP-----TPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESCAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 NYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQN
. . ... .. :::.:. :. ::: :: . :: : :: :.: :.:::::.:.::::
XP_005 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 RRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDH
::::.:. . :.
XP_005 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPP
250 260 270 280 290 300
>>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 316 init1: 224 opt: 314 Z-score: 232.3 bits: 51.6 E(85289): 3.4e-06
Smith-Waterman score: 314; 38.3% identity (63.0% similar) in 162 aa overlap (95-249:99-253)
70 80 90 100 110 120
pF1KB7 HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP
: .::. : . : .. :: ..::
XP_006 EACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTP-AAPPPPSSASP
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PVLCSNSSSLGSSTPTGAACAP----GDYGRQALSPAEAEKRSGGKRKSDSSDSQE---G
: ::. ::..:: .: ..: . : :.:.. :.:..::.: : :
XP_006 PQNASNNP-----TPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESCAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 NYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQN
. . ... .. :::.:. :. ::: :: . :: : :: :.: :.:::::.:.::::
XP_006 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 RRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDH
::::.:. . :.
XP_006 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPP
250 260 270 280 290 300
>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 316 init1: 224 opt: 314 Z-score: 232.3 bits: 51.6 E(85289): 3.4e-06
Smith-Waterman score: 314; 38.3% identity (63.0% similar) in 162 aa overlap (95-249:99-253)
70 80 90 100 110 120
pF1KB7 HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP
: .::. : . : .. :: ..::
XP_005 EACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTP-AAPPPPSSASP
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PVLCSNSSSLGSSTPTGAACAP----GDYGRQALSPAEAEKRSGGKRKSDSSDSQE---G
: ::. ::..:: .: ..: . : :.:.. :.:..::.: : :
XP_005 PQNASNNP-----TPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESCAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 NYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQN
. . ... .. :::.:. :. ::: :: . :: : :: :.: :.:::::.:.::::
XP_005 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 RRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDH
::::.:. . :.
XP_005 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPP
250 260 270 280 290 300
>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 316 init1: 224 opt: 314 Z-score: 232.3 bits: 51.6 E(85289): 3.4e-06
Smith-Waterman score: 314; 38.3% identity (63.0% similar) in 162 aa overlap (95-249:99-253)
70 80 90 100 110 120
pF1KB7 HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP
: .::. : . : .. :: ..::
NP_705 EACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTP-AAPPPPSSASP
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PVLCSNSSSLGSSTPTGAACAP----GDYGRQALSPAEAEKRSGGKRKSDSSDSQE---G
: ::. ::..:: .: ..: . : :.:.. :.:..::.: : :
NP_705 PQNASNNP-----TPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESCAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 NYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQN
. . ... .. :::.:. :. ::: :: . :: : :: :.: :.:::::.:.::::
NP_705 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 RRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDH
::::.:. . :.
NP_705 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPP
250 260 270 280 290 300
>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 316 init1: 224 opt: 314 Z-score: 232.3 bits: 51.6 E(85289): 3.4e-06
Smith-Waterman score: 314; 38.3% identity (63.0% similar) in 162 aa overlap (95-249:99-253)
70 80 90 100 110 120
pF1KB7 HRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSP
: .::. : . : .. :: ..::
XP_011 EACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTP-AAPPPPSSASP
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 PVLCSNSSSLGSSTPTGAACAP----GDYGRQALSPAEAEKRSGGKRKSDSSDSQE---G
: ::. ::..:: .: ..: . : :.:.. :.:..::.: : :
XP_011 PQNASNNP-----TPANAAKSPLLNSPTVAKQIF-PWMKESRQNTKQKTSSSSSGESCAG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 NYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQN
. . ... .. :::.:. :. ::: :: . :: : :: :.: :.:::::.:.::::
XP_011 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 RRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDH
::::.:. . :.
XP_011 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPP
250 260 270 280 290 300
304 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:19:57 2016 done: Fri Nov 4 21:19:58 2016
Total Scan time: 8.790 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]