FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7615, 304 aa
  1>>>pF1KB7615 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0899+/-0.000908; mu= 5.1121+/- 0.055
 mean_var=219.5131+/-44.827, 0's: 0 Z-trim(114.1): 178  B-trim: 80 in 1/51
 Lambda= 0.086565
 statistics sampled from 14517 (14716) to 14517 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.452), width:  16
 Scan time:  2.550

The best scores are:                                      opt bits E(32554)
CCDS34605.1 MEOX2 gene_id:4223|Hs108|chr7          ( 304) 2101 274.4 7.3e-74
CCDS11466.1 MEOX1 gene_id:4222|Hs108|chr17         ( 254)  525 77.5 1.1e-14
CCDS42343.1 MEOX1 gene_id:4222|Hs108|chr17         ( 139)  519 76.5 1.3e-14


>>CCDS34605.1 MEOX2 gene_id:4223|Hs108|chr7               (304 aa)
 initn: 2101 init1: 2101 opt: 2101  Z-score: 1439.6  bits: 274.4 E(32554): 7.3e-74
Smith-Waterman score: 2101; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB7 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEHPLFGCLRSPHATAQGLHPFSQSSLALHGRSDHMSYPELSTSSSSCIIAGYPNEEGMF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSGGPPEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSSPPVLCSNSSSLGSSTPTGAACAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAATLQQTGDSIANEDSHDSDHSSE
              250       260       270       280       290       300

           
pF1KB7 HAHL
       ::::
CCDS34 HAHL
           

>>CCDS11466.1 MEOX1 gene_id:4222|Hs108|chr17              (254 aa)
 initn: 629 init1: 487 opt: 525  Z-score: 376.9  bits: 77.5 E(32554): 1.1e-14
Smith-Waterman score: 624; 47.8% identity (64.3% similar) in 255 aa overlap (4-249:17-233)

                            10           20        30              
pF1KB7              MEHPLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YP
                       :..::::.::.    :.::  .  . ...: . : ..     ::
CCDS11 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB7 ELSTSSSSCIIAGYPNEEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSS
       ..:.:  .    . :.:: .:. ::                 :.       :::.:    
CCDS11 DFSASCLAATPHSLPQEEHIFTEQHPA-------------FPQSP------NWHFPV---
               70        80                     90                 

     100       110       120       130       140        150        
pF1KB7 PPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAE
         : ::.    .:.::  :  ::.      ..::::    ::.   ::: ::  . .  :
CCDS11 --SDARR----RPNSG--PAGGSKE----MGTSSLGLVDTTGG---PGDDYGVLGSTANE
        100             110           120          130       140   

      160       170       180       190       200       210        
pF1KB7 AEKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRY
       .::.:. .:: .:::.::.  : : .:: :::::::::::.:::::::::::::::::::
CCDS11 TEKKSSRRRK-ESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRY
           150        160       170       180       190       200  

      220       230       240       250       260       270        
pF1KB7 EIAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAA
       ::::::::.::::::::::::::::::::::                             
CCDS11 EIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE        
            210       220       230       240       250            

      280       290       300    
pF1KB7 TLQQTGDSIANEDSHDSDHSSEHAHL

>>CCDS42343.1 MEOX1 gene_id:4222|Hs108|chr17              (139 aa)
 initn: 520 init1: 487 opt: 519  Z-score: 376.1  bits: 76.5 E(32554): 1.3e-14
Smith-Waterman score: 519; 70.8% identity (84.2% similar) in 120 aa overlap (131-249:3-118)

              110       120       130       140        150         
pF1KB7 PSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAEA
                                     .::::    ::   .::: ::  . .  :.
CCDS42                             MGTSSLGLVDTTG---GPGDDYGVLGSTANET
                                           10           20         

     160       170       180       190       200       210         
pF1KB7 EKRSGGKRKSDSSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYE
       ::.:. .:...:::.::.  : : .:: :::::::::::.::::::::::::::::::::
CCDS42 EKKSS-RRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYE
      30         40        50        60        70        80        

     220       230       240       250       260       270         
pF1KB7 IAVNLDLTERQVKVWFQNRRMKWKRVKGGQQGAAAREKELVNVKKGTLLPSELSGIGAAT
       :::::::.::::::::::::::::::::::                              
CCDS42 IAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGDSTASPSSE         
       90       100       110       120       130                  




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:19:56 2016 done: Fri Nov  4 21:19:56 2016
 Total Scan time:  2.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]